GSM4050924: TF ChIP-seq from K562 (ENCLB575LDV); Homo sapiens; ChIP-S... - SRA

SRX6783961: GSM4050924: TF ChIP-seq from K562 (ENCLB575LDV); Homo sapiens; ChIP-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 39M spots, 1.9G bases, 781.5Mb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS127TDC: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZBTB40

SAMN12641518 • SRS5330121 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: general protocol: https://www.encodeproject.org/documents/33bb3ae1-9402-4274-9513-085403fe8ecc/@@download/attachment/White-Lab-K562-ChIP.pdf other: https://www.encodeproject.org/documents/d8403f5c-e846-4deb-9d16-0b7f50b07405/@@download/attachment/2016-249.pdf

Experiment attributes:

GEO Accession: GSM4050924

Links:

NCBI link: NCBI Entrez (gds)

Runs: 2 runs, 39M spots, 1.9G bases, 781.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR10049502	17,664,987	900.9M	346.6Mb	2019-09-05
SRR10049503	21,290,927	1G	434.9Mb	2019-09-05

ID:: 8933657

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