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SRX6060976: GSM3886299: Eso26_GATA6; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 24.3M spots, 7.3G bases, 3Gb downloads

Submitted by: NCBI (GEO)
Study: Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in esophageal adenocarcinoma [ChIP-Seq]
show Abstracthide Abstract
We profiled fresh-frozen esophageal tumor and normal samples and cell lines with chromatin immunoprecipitation sequencing (ChIP-Seq). Mathematically modeling was performed to establish (super)-enhancers landscapes and inter-connected transcriptional circuitry formed by master TFs. Coregulation and cooperation between master TFs was investigated by ChIP-Seq, RNASeq, 4C-Seq and luciferase assay. Biological functions of candidate factors were evaluated by measuring cell proliferation, colony formation, cell apoptosis and xenograft growth. Overall design: Esophageal Cancer and normal cell lines and fresh-frozen tissues were harvested, and ChIPseq was performed using H3K27Ac and transcription factor antibodies.
Sample: Eso26_GATA6
SAMN12046902 • SRS4962254 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 4000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol
Experiment attributes:
GEO Accession: GSM3886299
Links:
Runs: 1 run, 24.3M spots, 7.3G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR929156424,281,2457.3G3Gb2019-07-31

ID:
8104502

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