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SRX5853002: GSM3772936: THP-1_DMSO_1_H3; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina Genome Analyzer) run: 28M spots, 1.8G bases, 485Mb downloads

Submitted by: NCBI (GEO)
Study: Androgen Receptor Signalling in Macrophages Promotes TREM-1 mediated Cell Migration and Invasion pluripotent and lineage-committed cells.
show Abstracthide Abstract
The Androgen Receptor (AR) is the master regulator of Prostate Cancer (PCa) development, and inhibition of AR signalling is the most effective PCa treatment. AR is expressed in PCa cells and also in the PCa-associated stroma, including infiltrating macrophages ). Macrophages play a decisive role in PCa initiation and progression, however, the role of AR in these cells remains largely unexplored. Here we show that AR signalling in macrophage-like THP-1 cell line supports PCa cell line migration and invasion in culture via increased Triggering REceptor of Macrophage-1 (TREM-1) signalling and expression of its downstream cytokines. Overall design: THP-1 cells were stimulated with 20ng/ml of PMA in hormone-deprived medium for 2 days, followed by stimulation with 10ng/ml of LPS and 10ng/ml of IFN? for 24 hrs. Cells were then stimulated for 4 hours with 10nM of R1881 (synthetic testosterone) or DMSO control. Then, cells were fixed for 10 minutes with 1% formaldehyde, quenched with glycine and lysed in LB1, LB2 and LB3 (Schmidt et al, 2009). Lysates were incubated with antibodies for AR or H3K27ac.
Sample: THP-1_DMSO_1_H3
SAMN11666322 • SRS4776912 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina Genome Analyzer
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303). Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3' end. After adapter ligation DNA was PCR amplified with Illumina primers for 15 cycles and library fragments of ~250 bp (insert plus adaptor and PCR primer sequences) were band isolated from an agarose gel. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.
Experiment attributes:
GEO Accession: GSM3772936
Links:
Runs: 1 run, 28M spots, 1.8G bases, 485Mb
Run# of Spots# of BasesSizePublished
SRR907773528,012,2961.8G485Mb2019-05-20

ID:
7863034

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