GSM3634150: ChIP-seq from GM12878 (ENCLB397QCK); Homo sapiens; ChIP-S... - SRA

SRX5457143: GSM3634150: ChIP-seq from GM12878 (ENCLB397QCK); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 34.2M spots, 6.9G bases, 4.7Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS519VWT: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

SAMN07791042 • SRS2627545 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Experiment attributes:

GEO Accession: GSM3634150

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 34.2M spots, 6.9G bases, 4.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR8659955	34,193,636	6.9G	4.7Gb	2019-03-19

ID:: 7373493

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