U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX5447478: GSM3636762: OCT6Flag_input; Homo sapiens; ChIP-Seq
1 ILLUMINA (HiSeq X Ten) run: 28.9M spots, 8.7G bases, 3Gb downloads

Submitted by: NCBI (GEO)
Study: OCT6 uniquely replaces OCT4 in inducing human pluripotency
show Abstracthide Abstract
Somatic cells can be reprogrammed into pluripotent stem cells by the ectopic expression of OCT4, SOX2, KLF4, and c-MYC. Although SOX2, KLF4, and c-MYC (SKM) can be substituted by their respective family members, OCT4 is considered to not be interchangeable with any octamer-binding POU proteins. Through a screening with 102 candidate genes, here we have identified that the POU protein OCT6 (also known as SCIP, TST-1, and POU3F1), in conjunction with SKM, is capable of functionally replacing OCT4 and inducing pluripotency. OCT6-mediated reprogramming works with any human cell type, but not with mouse cells. The reprogramming process involving OCT6 is relatively inefficient and slow. This is mainly due to either inefficient formation of OCT6-SOX2 heterodimers onto canonical SOX-OCT sites or lower transactivation activity of OCT6. We demonstrate that modulating either the DNA-binding propensity or the transactivation activity of OCT6 enhances iPSC generation to the efficiency of OCT4. These results thus provide the first evidence that a POU factor other than OCT4 can induce human pluripotency. Overall design: The TRA1-60+ cells in the two induction system at day 2, 4, 6, 8, 10, 12, and 16, which were isolated by FACS using APC anti-human CD13 (BioLegend), PE anti-human TRA-1-60 (BioLegend). The sorted TRA1-60+ cells during reprogramming were washed several times in 0.5% BSA-PBS (Sigma) solution and subsequently picked and transferred into lysate buffer by a mouth pipette with 50 cell for each tube. At least 3 replicates were set for each time point.
Sample: OCT6Flag_input
SAMN11041352 • SRS4424480 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: HiSeq X Ten
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: DNA was extracted by reverse crosslinking at 65 °C overnight with proteinase K (20 μg/μl) and RNaseA (20 ug/ul) and purified using phenol/chloroform extraction. Sequencing libraries were prepared using NEBNext Ultra II DNA library prep kit (NEB). 
Experiment attributes:
GEO Accession: GSM3636762
Links:
Runs: 1 run, 28.9M spots, 8.7G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR864975328,877,9998.7G3Gb2019-10-24

ID:
7363828

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...