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SRX4824366: GSM2495656: 22Rv1_DTM_V7; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 45.8M spots, 2.3G bases, 1.4Gb downloads

Submitted by: NCBI (GEO)
Study: Canonical and non-canonical regulatory roles of androgen receptor variant 7 in prostate cancer
show Abstracthide Abstract
The androgen receptor splice variant 7 (AR-V7) lacks the ligand-binding domain; is detected with increased frequency in advanced prostate cancer and is postulated to be one crucial mechanism for disease progression and therapeutic resistance to androgen deprivation in castration–resistant prostate cancer (CRPC). Targeting AR-V7 or unique downstream targets could provide novel therapeutic approaches for CRPC. Here, we report that, independent of ligand, AR-V7 binds not only to the androgen-responsive element (ARE) sites inducing canonical AR signaling but also to non-canonical target sites where ligand-stimulated full-length AR (AR-FL) does not bind. These AR-V7 “solo” binding sites are mainly found at gene promoters and are co-occupied by a zinc-finger transcription factor ZFX and the co-activator BRD4, both of which physically interact with AR-V7. Consequently, AR-V7 not only recapitulates AR-FL action without androgen but uniquely regulates transcripts correlating with AR-V7 expression in the TCGA prostate cancer cohort. Mechanistically, ZFX appears to function as a pioneer factor for AR-V7 at solo-binding sites and BRD4 inhibitors but not anti-androgens suppress AR-V7 action at solo-binding sites as well as AR-V7-dependent growth. Additionally, knockdown of ZFX, or two downstream targets uniquely co-activated by AR-V7 (ZNF32 and FZD6), also suppressed growth of AR-V7-dependent CRPC cells. AR-V7 directly activated genes differentiate tumor from normal prostate tissues and predict poor prognosis in patients. Thus AR-V7 has both canonical and non-canonical regulatory functions in CRPC, which may provide new therapeutic avenues. Overall design: mRNA profiles of knocking down AR-FL, AR-V7 or control vector in 22Rv1 cells were generated by deep-sequencing, in duplicate. mRNA profiles of knocking down ZFX or control vector in 22Rv1 cells were generated by deep-sequencing, in duplicate. mRNA profiles of 22Rv1 cells which were charcoal stripped for 3 days and then treated with vehicle, DHT, DHT plus MDV3100 or DHT plus JQ1 were generated by deep-sequencing, in duplicate. Examination of the genome-wide binding of full-length androgen receptor (AR-FL), AR-V7, Brd4 and ZFX in an castration-resistant prostate cancer cell line in the presence of different drug treatments.
Sample: 22Rv1_DTM_V7
SAMN06347978 • SRS1991782 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with specific antibodies against AR-FL, AR-V7, BRD4 or ZFX. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303). Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3' end. After adapter ligation DNA was PCR amplified with Illumina primers for up to 18 cycles and library fragments of ~250 bp (insert plus adaptor and PCR primer sequences) were band isolated from an agarose gel. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Illumina HiSeq 2000 following the manufacturer's protocols.
Experiment attributes:
GEO Accession: GSM2495656
Links:
Runs: 1 run, 45.8M spots, 2.3G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR799341345,804,2042.3G1.4Gb2018-10-10

ID:
6524445

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