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SRX3474298: GSM2891163: LNCaP TRIM28 + Ethl; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiScanSQ) run: 28.1M spots, 1.4G bases, 413.6Mb downloads

Submitted by: NCBI (GEO)
Study: TRIM28 protects TRIM24 from SPOP-mediated degradation and promotes prostate cancer progression [ChIP-seq]
show Abstracthide Abstract
In this study, proteomic profiling of TRIM24 interactome in conjunction with shRNA screening of TRIM24 top-interactors nominated that TRIM28 is indispensable for TRIM24 protein stability. We showed that TRIM28 stabilizes TRIM24 against SPOP-mediated ubiquitination and degradation. TRIM28 promotes TRIM24 and AR transcription activity, androgen-dependent and -independent PCa growth. In addition, we demonstrated that TRIM28 level in high in advanced PCa, which drives TRIM24/AR transcription activity in a similar manner to SPOP mutation, which implies that TRIM28 potentially dictates the therapeutic outcome of TRIM24-targeted therapy. Overall design: genetic modification design
Sample: LNCaP TRIM28 + Ethl
SAMN08182180 • SRS2760709 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiScanSQ
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Chromatin in nuclear fraction were sheared to 200-500bp using anCovaris M220 Focused-ultrasonicator, Lysates were clarified from sonicated nuclei and protein-DNA complexes were immunoprecipitated using the indicated antisera. DNA was then uncrosslinked from protein, purified and sequenced using Illumina Genome Analyzers followig protocols recommended by the manufacturer. Libraries were prepared according to Illumina's instructions.
Experiment attributes:
GEO Accession: GSM2891163
Links:
Runs: 1 run, 28.1M spots, 1.4G bases, 413.6Mb
Run# of Spots# of BasesSizePublished
SRR638021628,092,2631.4G413.6Mb2018-10-08

ID:
4836584

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