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SRX335546: Transcriptome assembly of Gossypium raimondii using 454 sequencing
1 LS454 (454 GS FLX Titanium) run: 1.5M spots, 494.2M bases, 296Mb downloads

Submitted by: University of Texas at Austin
Study: Gossypium raimondii Transcriptome or Gene expression
show Abstracthide Abstract
The sequencing was performed on 454/Roche FLX technology using normalized cDNA libraries prepared from young leaves, roots, bolls, ovules, and fibers of G. raimondii. Reads from two independent sequencing samples were combined to assemble contigs. The combined sequencing analysis using 1,464,815 reads from D-genome resulted in 65,542 contigs for D-genome. The majority of contigs (~70%) ranged from 200 to 1,000-bp.This large set of D-genome ESTs will be valuable resources for gene expression study and crop improvement in cultivated allotetraploid cotton.
Sample: 454 sequencing for Gossypium raimondii transcriptome
SAMN02316114 • SRS470619 • All experiments • All runs
Library:
Name: 454_Gossypium raimondii
Instrument: 454 GS FLX Titanium
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 1.5M spots, 494.2M bases, 296Mb
Run# of Spots# of BasesSizePublished
SRR9529051,464,815494.2M296Mb2014-08-01

ID:
472045

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