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SRX335389: Transcriptome assembly of Gossypium arboreum using 454 sequencing
1 LS454 (454 GS FLX Titanium) run: 1.7M spots, 597.3M bases, 360.9Mb downloads

Submitted by: University of Texas at Austin
Study: Gossypium arboreum transcriptome assembly using 454 sequencing
show Abstracthide Abstract
The sequencing was performed on 454/Roche FLX technology using normalized cDNA libraries prepared from young leaves, roots, bolls, ovules, and fibers of G. arboreum L. Reads from two independent sequencing samples were combined to assemble contigs. The combined sequencing analysis using 1,699,776 reads from A-genome resulted in 89,588 contigs for A-genome. The majority of contigs (~70%) ranged from 200 to 1,000-bp. This large set of A-ESTs will be a valuable resource for gene expression studies and crop improvement in cultivated allotetraploid cotton.
Sample: 454 sequencing for Gossypium arboreum transcriptome
SAMN02316113 • SRS470474 • All experiments • All runs
Library:
Name: 454_Gossypium arboreum
Instrument: 454 GS FLX Titanium
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 1.7M spots, 597.3M bases, 360.9Mb
Run# of Spots# of BasesSizePublished
SRR9526851,699,776597.3M360.9Mb2014-08-01

ID:
470591

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