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SRX3230379: GSM2797498: CBX5; Homo sapiens; ChIP-Seq
2 ILLUMINA (NextSeq 500) runs: 77.1M spots, 5.8G bases, 2.2Gb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide TFBS (Transcription Factor Binding Site) map analysis in HepG2 cells
show Abstracthide Abstract
We performed Chip-Seq analysis of 208 Factors in HepG2, using ENCODE Consortium Data with 2 replicates and 2 controls for each factors, to study transcription factor landscape within single cell type. Overall design: ChipSeq data was produced by ENCODE Production Lab and submitted to ENCODE Data Coordination Center. Each of 208 TFs/DNA associated proteins included in this study were processed by the study group itself to generate only peaks passing IDR cutoff of 0.02 FDR(false discovery rate). An alternative analysis of ENCODE data.
Sample: CBX5
SAMN07718475 • SRS2554894 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Cross-linked chromatin was immunoprecipitated with an antibody. The Protein:DNA crosslinks were then reversed and the DNA fragments were recovered and sequenced. Please see protocol notes below and go to http://hudsonalpha.org/myers-lab/protocols for the most current version of the protocol. Illumina Single End for ChIP-seq
Experiment attributes:
GEO Accession: GSM2797498
Links:
Runs: 2 runs, 77.1M spots, 5.8G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR611765535,595,9242.7G1Gb2019-12-01
SRR611765641,511,4783.1G1.2Gb2019-12-01

ID:
4539459

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