U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX3123827: GSM2752595: jc2923_MCF7_Input_AZD2014; Homo sapiens; ChIP-Seq
7 ILLUMINA (Illumina HiSeq 2500) runs: 21.5M spots, 1.1G bases, 532.9Mb downloads

Submitted by: NCBI (GEO)
Study: Estrogen receptor ChIP-seq in response to mTOR inhibition
show Abstracthide Abstract
We have used ChIP-seq to profile binding of the estrogen receptor (ER) to chromatin in response to two mTOR inhibitors, i.e. everolimus (RAD001) and vistusertib (AZD2014). Two hours of treatment with these inhibitors significantly affected mTOR signaling, but surprisingly did not affect binding of ER to chromatin. This suggests that these mTOR inhibitors work through largely ER-independent mechanisms. Overall design: Estrogen receptor ChIP-seq was performed on chromatin from asynchronous MCF7 cells in full estrogenic media treated for 2 hours with vehicle, everolimus, or vistusertib.
Sample: jc2923_MCF7_Input_AZD2014
SAMN07551727 • SRS2458186 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Cells were crosslinked for 10min using 1% formaldehyde. After sonication, chromatin immunoprecipitation was performed using a polyclonal ERa antibody over night. After decrosslinking at 65 C over night followed by RNase A and proteinase K treatment, immunoprecipitated DNA was purified by phenol-chloroform extraction. DNA was prepared for Illumina sequencing on the HiSeq 2500 using the ThruPLEX DNA-seq kit according to the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM2752595
Links:
Runs: 7 runs, 21.5M spots, 1.1G bases, 532.9Mb
Run# of Spots# of BasesSizePublished
SRR59664303,143,853157.2M79.7Mb2018-04-06
SRR59664313,147,473157.4M79.1Mb2018-04-06
SRR59664323,161,987158.1M78.5Mb2018-04-06
SRR59664333,156,270157.8M78.1Mb2018-04-06
SRR59664342,750,023137.5M65.9Mb2018-04-06
SRR59664352,991,814149.6M72.9Mb2018-04-06
SRR59664363,157,655157.9M78.6Mb2018-04-06

ID:
4417849

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...