GSM2700470: ChIP-seq from breast epithelium (ENCLB358SFF); Homo sapie... - SRA

SRX3010077: GSM2700470: ChIP-seq from breast epithelium (ENCLB358SFF); Homo sapiens; ChIP-Seq
4 ILLUMINA (Illumina HiSeq 2500) runs: 60.1M spots, 4.6G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS433LAO: EnTEX: Breast - Mammary Tissue

SAMN06464406 • SRS2040066 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Experiment attributes:

GEO Accession: GSM2700470

Links:

NCBI link: NCBI Entrez (gds)

Runs: 4 runs, 60.1M spots, 4.6G bases, 1.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR5832871	18,871,725	1.4G	536.7Mb	2017-07-17
SRR5832872	19,275,258	1.5G	555.1Mb	2017-07-17
SRR5832873	11,094,047	843.1M	382.7Mb	2017-07-17
SRR5832874	10,812,325	821.7M	372.9Mb	2017-07-17

ID:: 4284369

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