GSM2693320: Ishikawa TH73, FoxA1 ChIP; Homo sapiens; ChIP-Seq - SRA

SRX2982415: GSM2693320: Ishikawa TH73, FoxA1 ChIP; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 64.6M spots, 3.2G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)

Study: FOXA1 in HER2+ endometrial cancer patients predicts good outcome

PRJNA393068 • SRP111074 • All experiments • All runs

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ChIP-seq of endometrial cancer cell lines Ishikawa (Ish) and Hec1a (Hec) cells Overall design: Cell lines x-linked and ChIP-seq with FOXA1 antibody

Sample: Ishikawa TH73, FoxA1 ChIP

SAMN07314654 • SRS2335429 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: Libraries from ChIP samples were made with two different kits. With Illumina (San Diego, CA) TruSeq™ DNA Sample Preparation this modifications were used: ligation with of 1/10th the manufacturers recommended adapter amounts and agarose gel selection of DNA fragments in the 200-500 bp size range. For ThruPLEX (Rubicon Genomics, Ann Arbor, MI, USA. Supplied by Diagenode) library preparatiopn the manufacturer’s instructions were followed. ThruPLEX, Rubicon Genomics

Experiment attributes:

GEO Accession: GSM2693320

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 64.6M spots, 3.2G bases, 1.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR5803081	64,566,782	3.2G	1.8Gb	2019-12-02

ID:: 4250053

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Sequence Read Archive

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