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SRX2771329: GSM2592952: H3 healthy sample 2; Homo sapiens; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 22.8M spots, 1.7G bases, 423.2Mb downloads

Submitted by: NCBI (GEO)
Study: Targeting the MTF2-MDM2 Axis Sensitizes Refractory Acute Myeloid Leukemia to Chemotherapy [ChIP-Seq]
show Abstracthide Abstract
Deep sequencing has revealed that epigenetic modifiers are the most mutated genes in acute myeloid leukemia (AML). Thus, elucidating epigenetic dysregulation in AML is crucial to understand disease mechanisms. Here, we demonstrate that Metal Response Element Binding Transcription Factor 2/Polycomblike 2 (MTF2/PCL2) plays a fundamental role in the Polycomb repressive complex 2 (PRC2) and that its loss elicits an altered epigenetic state underlying refractory AML. Unbiased systems analyses identified the loss of MTF2-PRC2 repression of MDM2 as central to, and therefore a biomarker for, refractory AML. Thus, immature MTF2- deficient CD34+CD38- cells overexpress MDM2, thereby inhibiting p53 that leads to chemoresistance due to defects in cell cycle regulation and apoptosis. Targeting this dysregulated signaling pathway by MTF2 overexpression or MDM2 inhibitors sensitized refractory patient leukemic cells to induction chemotherapeutics and prevented relapse in AML patient-derived xenograft (PDX) mice. Therefore, we have uncovered a direct epigenetic mechanism by which MTF2 functions as a tumor suppressor required for AML chemotherapeutic sensitivity and identified a potential therapeutic strategy to treat refractory AML. Overall design: Fold change analysis between treatment and control
Sample: H3 healthy sample 2
SAMN06854460 • SRS2154803 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Samples were sheared using a Covaris sonicator until DNA reached a final size of 100-300bp. 750ng of drosophila spike in chromatin (Active Motif) was added to each sonicated sample. 4ug of anti-H3K27me3 antibody (Cell Signaling, c36B11) or H3 (Abcam, ab1791) was bound to pre-blocked Protein A7 magnetic beads (Millipore) in combination with 2ug of Spike-in antibody (Active Motif) for 12 hours. The beads were then combined with sonicated sample containing Drosophila spike in chromatin and incubated overnight. After incubation, beads were collected and DNA-antibody complexes were eluted at 65 o C. Crosslinks were reversedovernight at 65 o C. Samples were treated with Proteinase K (Fisher Scientific) and RNaseA (Fisher Scientific) and DNA was purified using phenol-chloroform. All ChIP-seq experiments were cell number normalized and 150,000 cells per biological sample were used for each H3 and H3K27me3 ChIP experiment. For sequencing total ChIP DNA was used for library preparation (NextFlex Illumina Chip-seq kit).
Experiment attributes:
GEO Accession: GSM2592952
Links:
Runs: 1 run, 22.8M spots, 1.7G bases, 423.2Mb
Run# of Spots# of BasesSizePublished
SRR548847622,797,1891.7G423.2Mb2018-08-01

ID:
3998683

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