GSM2534385: ChIP-seq from OCI-LY7 (ENCLB242PNW); Homo sapiens; ChIP-S... - SRA

SRX2636334: GSM2534385: ChIP-seq from OCI-LY7 (ENCLB242PNW); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 37.5M spots, 1.3G bases, 1,004.5Mb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS121JKZ: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

SAMN05733848 • SRS1686798 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Experiment attributes:

GEO Accession: GSM2534385

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 37.5M spots, 1.3G bases, 1,004.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR5339337	37,492,325	1.3G	1,004.5Mb	2017-03-14

ID:: 3814406

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