GSM2534317: ChIP-seq from NCI-H929 (ENCLB543XRW); Homo sapiens; ChIP-... - SRA

SRX2636185: GSM2534317: ChIP-seq from NCI-H929 (ENCLB543XRW); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 30.4M spots, 4.6G bases, 3Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS197CBA: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows: cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

SAMN06464342 • SRS2039982 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Experiment attributes:

GEO Accession: GSM2534317

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 30.4M spots, 4.6G bases, 3Gb

Run	# of Spots	# of Bases	Size	Published
SRR5339150	30,365,590	4.6G	3Gb	2017-03-13

ID:: 3814257

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