GSM2424109: ChIP-seq from K562 (ENCLB687QGX); Homo sapiens; ChIP-Seq - SRA

SRX2424567: GSM2424109: ChIP-seq from K562 (ENCLB687QGX); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 29.5M spots, 1.1G bases, 532.3Mb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS201LYR: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

SAMN06121691 • SRS1860950 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina Genome Analyzer IIx

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Experiment attributes:

GEO Accession: GSM2424109

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 29.5M spots, 1.1G bases, 532.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR5112216	29,457,398	1.1G	532.3Mb	2017-01-17

ID:: 3520356

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