GSM2423843: ChIP-seq from K562 (ENCLB350DWH); Homo sapiens; ChIP-Seq - SRA

SRX2424292: GSM2423843: ChIP-seq from K562 (ENCLB350DWH); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 27.9M spots, 5.6G bases, 3.6Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS360JZL: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TAF7

SAMN06121854 • SRS1860846 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/aeb8ebc0-941e-4393-b2b8-97048f6982d8/@@download/attachment/Chicago%20ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Experiment attributes:

GEO Accession: GSM2423843

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 27.9M spots, 5.6G bases, 3.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR5111941	27,942,865	5.6G	3.6Gb	2017-01-17

ID:: 3520081

SRA

Sequence Read Archive

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