GSM2423141: ChIP-seq from MCF-7 (ENCLB496FAI); Homo sapiens; ChIP-Seq - SRA

SRX2423588: GSM2423141: ChIP-seq from MCF-7 (ENCLB496FAI); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 33.6M spots, 6.8G bases, 3.8Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS168ISE: Mammary gland, adenocarcinoma. (PMID: 4357757)

SAMN06121651 • SRS1860464 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/d6c4ad11-71ce-4cf4-97f1-7f635d2de09b/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_HiSeq.pdf

Experiment attributes:

GEO Accession: GSM2423141

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 33.6M spots, 6.8G bases, 3.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR5111235	33,637,611	6.8G	3.8Gb	2017-01-17

ID:: 3519377

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