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SRX1702480: GSM2122581: AR ChIPSeq_abl_GSK treated; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 36M spots, 1.8G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)
Study: Gemone-wide changes of epigenetic mark H3K27 trimethylation (H3K27me3) and AR in prostate cancer cells upon the treatment of EZH2 inhibitors [ChIP-seq]
show Abstracthide Abstract
Our initial data showed different responses of abl and DU145 cells to EZH2 inhibitors, therefore we detected the chromatin binding signals of H3K27me3 in both cell lines in the presence of the compounds. We found that genome-wide changes in H3K27me3 levels were not associated with the inhibitor-mediated transcriptional programs or biological effects. Since the gene expression profiles upon the compound treatment indicated an important role of AR signaling in mediating the inhibitory action of the drugs in abl cells, we them mapped AR chromatin binding patterns in the presence or absence of EZH2 inhibitors. It was interesting to detect a dramatic decline in AR binding intesities at regulatory regions of the regulated target genes. Overall design: Detection of the changes in chromatin binding intesities/signals of H3K27me3 and AR upon EZH2 inhibitors in prostate cancer cells
Sample: AR ChIPSeq_abl_GSK treated
SAMN04849730 • SRS1397603 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Prostate cancer cells were crosslinked with 1% formaldehyde and lysed in RIPA buffer with 0.3 M NaCl. ChIP DNA was purified using PCR Purification Kit (Qiagen) and then quantified by Quant-iTTM dsDNA HS Assay Kit (Invitrogen). ChIP-Seq libraries were prepared using ThruPLEX-FD Prep Kit (Rubicon Genomics) according to the manufacturer's protocol.
Experiment attributes:
GEO Accession: GSM2122581
Links:
Runs: 1 run, 36M spots, 1.8G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR337596435,982,5801.8G1.2Gb2017-09-01

ID:
2438321

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