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SRX1549455: GSM2048382: input DNA; Mus musculus; ChIP-Seq
9 ILLUMINA (Illumina HiSeq 2000) runs: 35.8M spots, 1.9G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: PROP1 triggers epithelial-mesenchymal transition-like process in pituitary stem cells [ChIP-Seq]
show Abstracthide Abstract
Mutations in PROP1 are the most common cause of hypopituitarism in humans; therefore, unraveling its mechanism of action is highly relevant from a therapeutic perspective. Our current understanding of the role of PROP1 in the pituitary gland is limited to the regulation of pituitary transcription factors Hesx1 and Pit1. To elucidate the comprehensive PROP1-dependent gene regulatory network, we conducted genome wide analysis of PROP1 DNA binding and effects on gene expression in mutant tissues, isolated stem cells and engineered cell lines. We determined that PROP1 is essential for maintaining proliferation of stem cells and stimulating them to undergo an epithelial to mesenchymal transition-like process necessary for cell migration and differentiation. Genomic profiling reveals that PROP1 binds to and represses claudin 23, characteristic of epithelial cells, and it activates EMT inducer genes: Zeb2, Notch2 and Gli2. Our findings identify PROP1 as a central transcriptional component of pituitary stem cell differentiation. Overall design: Streptavidin ChIP-Seq of biotinylated PROP1 in GHFT1 cells in 2 samples: GHFT1 Prop1Tag BirA expressing cells and GHFT1 BirA alone as negative control.
Sample: input DNA
SAMN04444414 • SRS1266243 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Lysates were clarified from sonicated nuclei and biotinylated PROP1-DNA complexes were isolated with streptavidin beads. Libraries were prepared according to Rubicon ThruPlex kit protocol (CAT. NO. R40012).
Experiment attributes:
GEO Accession: GSM2048382
Links:
Runs: 9 runs, 35.8M spots, 1.9G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR31292144,000,000208M126.6Mb2016-07-11
SRR31292154,000,000208M128.5Mb2016-07-11
SRR31292164,000,000208M129.4Mb2016-07-11
SRR31292174,000,000208M125.1Mb2016-07-11
SRR31292184,000,000208M126.5Mb2016-07-11
SRR31292194,000,000208M130.2Mb2016-07-11
SRR31292204,000,000208M127.1Mb2016-07-11
SRR31292214,000,000208M127.5Mb2016-07-11
SRR31292223,771,114196.1M121.7Mb2016-07-11

ID:
2193606

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