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SRX1141904: GSM1847792: ISC_Tcf4_WT; Mus musculus; ChIP-Seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 20.3M spots, 1G bases, 675.3Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Role of polycomb repressive complex 1 in the intestinal homeostasis [ChIP-seq 2]
show Abstracthide Abstract
These data include the genome wide occupancy of histone modifications and transcription factors by ChIP sequencing in mouse villi cells and in mouse ISCs. Overall design: Immuno-precipitation of formaldehyde cross-linked chromatin prepared from wild type Villi cells and wild type and Ring1a Ring1b dKO ISCs using specific antibody against different target protein/modification.
Sample: ISC_Tcf4_WT
SAMN03980420 • SRS1027229 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina Genome Analyzer II
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: The villi were isolated from the small intestine while the Lgr5-GFP+ ISCs were sorted from the isolated crypts Villi cells or ISCs were cross-linked with 1% formaldehyde and chromatin sonicated. Chromatin was precipitated with specific antibody, which was further purified using magnetic protein A coupled beads, and recovered DNA was used for high-throughput sequencing. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).
Experiment attributes:
GEO Accession: GSM1847792
Links:
Runs: 1 run, 20.3M spots, 1G bases, 675.3Mb
Run# of Spots# of BasesSizePublished
SRR215489220,336,6711G675.3Mb2015-10-29

ID:
1664030

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