U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX040992: ChIP-Seq analysis of H3K27me3 in human Mobilized CD34 cells
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 24.7M spots, 888.6M bases, 650.2Mb downloads

Design: Single read - Illumina
Submitted by: Gene Expression Omnibus (GEO)
Study: BI Human Reference Epigenome Mapping Project: ChIP-Seq in human subject
 • SRP001534 • All experiments • All runs
show Abstracthide Abstract
Characterization of the reference epigenome in humans by use of ChIP-Seq in a diverse panel of ES cells, tissue stem cells, reprogrammed stem cells, primary cells and tissues.
Sample: Generic sample from Homo sapiens
SAMN00119945 • SRS120868 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Lib:RI:20100308:09--ChIP:MA:20100216:09:Mobilized CD34:H3K27Me3
Instrument: Illumina Genome Analyzer IIx
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Spot descriptor:
1  forward

Experiment attributes: (show all 14 attributes...) (hide...)
CHIP_PROTOCOL_BEAD_TYPE: Protein A-Sepharose 4B
CHIP_ANTIBODY: H3K27Me3
CHIP_PROTOCOL_CHROMATIN_AMOUNT: 10 million cells
EXTRACTION_PROTOCOL: SDS lysis
CHIP_PROTOCOL_ANTIBODY_AMOUNT: 2-15 ug
CHIP_PROTOCOL_BEAD_AMOUNT: 70 ul bed volume
CHIP_PROTOCOL: Bernstein_BROAD_ENCODE_protocol
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 1
CHIP_ANTIBODY_CATALOG: 07-449
CHIP_ANTIBODY_PROVIDER: Upstate
CHIP_ANTIBODY_LOT: dam151401
EXPERIMENT_TYPE: Histone H3K27me3
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
GEO Accession: GSM669945
Pipeline: show...hide...
NameStepPrev StepProgramVersion
BASE_CALLS1NILGAPipeline1.6.1
QUALITY_SCORES21GAPipeline1.6.1
Links:
External link:
External link:
Runs: 1 run, 24.7M spots, 888.6M bases, 650.2Mb
Run# of Spots# of BasesSizePublished
SRR106751924,683,312888.6M650.2Mb2014-01-03

ID:
48441

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...