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SRX5994987: Metagenomics of human gut microbiome
1 ILLUMINA (Illumina HiSeq 2500) run: 5.8M spots, 1.1G bases, 627.9Mb downloads

Design: Nextera XT DNA Library Preparation kit
Submitted by: Massachusetts Institute of Technology
Study: BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with isolates, genomes, and longitudinal metagenomics and metabolomic data
show Abstracthide Abstract
We introduce a comprehensive library of human gut bacteria: a library of 7,758 bacterial isolates, characterized by 16S sanger sequences, which were obtained from healthy FMT donors recruited in the Boston area. This library covers most of the phylogenetic diversity found in the human gut and contains extensive strain diversity. Isolates can be requested at this address: XXX.We report Whole Genome Sequences (WGSs) for a phylogenetically-comprehensive subset of these isolates, representing a library of 3,632 WGSs, to enable researchers to test and predict phenotypes in vitro and in vivo. We also provide longitudinal 16S (1,169 samples from 90 donors), metagenomic (564 samples from 84 donors) and metabolomic data (179 samples from 83 donors) for a large cohort of FMT donors.
Sample:
SAMN11950061 • SRS4899914 • All experiments • All runs
Library:
Name: ae-0071_MG
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 5.8M spots, 1.1G bases, 627.9Mb
Run# of Spots# of BasesSizePublished
SRR92244195,836,7561.1G627.9Mb2019-07-31

ID:
8037385

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