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SRX5242767: Whole genome de novo sequence of Rikettsia colombianensi
1 PACBIO_SMRT (PacBio RS II) run: 163,482 spots, 3.2G bases, 10Gb downloads

Design: . colombianensi was initially isolated from A. dissimile ticks using the Shell vial technique. Later for the propagation of R. colombianensi were cultivated in Vero cells. Genome or R. colombianensi was sequenced using a PacBio RSII technology, and raw reads were assembled with PacBio SMRT Analysis pipeline v5.1.0 and the HGAP 4 protocol
Submitted by: Universidad de Cordoba
Study: Draft Genome Sequence of Rickettsia colombianensi, a novel distributed Tick-Associated Bacterium, Colombia
show Abstracthide Abstract
Rickettsia colombianensi was described as a Rickettsia strain in 2012, closely related to Rickettsia tamurae. R. colombianensi were detected in Amblyomma dissimile ticks removed from iguanas in the municipality of Monteria (Colombia)
Sample:
SAMN10135122 • SRS4245491 • All experiments • All runs
Library:
Name: X0
Instrument: PacBio RS II
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: SINGLE
Runs: 1 run, 163,482 spots, 3.2G bases, 10Gb
Run# of Spots# of BasesSizePublished
SRR8435191163,4823.2G10Gb2020-02-02

ID:
7078833

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