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SRX4940497: metagenomics of human oral microbiome
1 ILLUMINA (Illumina HiSeq 4000) run: 2M spots, 389.2M bases, 181.2Mb downloads

Design: Libraries were prepared using a dual barcoding system, and sequenced at 150bp paired-end on a Illumina HiSeq 4000 machine. Raw reads were quality trimmed and filtered against the human genome issue 19 to exclude host sequences using MOCAT2.
Submitted by: Luxembourg Centre for Systems Biomedicine
Study: Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus
show Abstracthide Abstract
Recent evidence from high-resolution molecular studies suggests links between microbial dysbiosis in the gastrointestinal tract and a number of complex chronic diseases including diabetes mellitus. The present study forms a pilot study for the larger Luxembourg-based Diabetes Multiplex Family Study (MUST). Within the pilot study, we investigate the interplay of the gastrointestinal microbiota, lifestyle and genetic background in an observational study of families with two or more individuals affected by type 1 diabetes mellitus. Faecal samples which have undergone comprehensive biomolecular extractions are currently analysed using a multi-omics approach. Anthropometric data, including demographics, medical history, health status, medication, and dietary habits of all study participants were collected and are integrated with molecular data.
Sample:
SAMN09837440 • SRS3984293 • All experiments • All runs
Library:
Name: M11.5-V3-saliva-metaG
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 2M spots, 389.2M bases, 181.2Mb
Run# of Spots# of BasesSizePublished
SRR81140152,002,419389.2M181.2Mb2019-03-26

ID:
6667108

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