Metatranscriptomes of harmful algal bloom in Sandusky Bay, Lake Erie,... - SRA

SRX19687523: Metatranscriptomes of harmful algal bloom in Sandusky Bay, Lake Erie, 2019
1 ILLUMINA (Illumina HiSeq 2500) run: 81.8M spots, 16.5G bases, 4.4Gb downloads

Design: Extracted RNA was sent to Discovery Life Sciences (Huntsville, AL), where the samples were treated to reduce rRNA using TruSeq Stranded Total RNA with Ribo-Zero Plant kit (Illumina, San Diego, CA). RNA was sequenced on an Illumina HiSeq 2500 platform with paired-end reads of 150 base pairs.

Submitted by: University of Michigan

Study: Metatranscriptomes of Planktothrix agardhii dominated harmful algal blooms in Sandusky Bay, Lake Erie, 2019

PRJNA945377 • SRP427593 • All experiments • All runs

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Metatranscriptomic data set from a transitioning bloom in Sandusky Bay, Lake Erie. Historically dominated by Planktothrix agardhii, the 2019 bloom season was the first in which cyanobacteria other than Planktothrix dominated for most of the season. Transcripts were taken to understand the function of the bloom community structure.

Sample:

SAMN33780069 • SRS17056696 • All experiments • All runs

Organism: freshwater metagenome

Library:

Name: Bridge_09232019

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: METATRANSCRIPTOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 81.8M spots, 16.5G bases, 4.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR23875461	81,774,468	16.5G	4.4Gb	2023-03-17

ID:: 26995076

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