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SRX2107136: Pseudomonas sp. URIL14HWK12:I2
1 ILLUMINA (Illumina HiSeq 2000) run: 8.1M spots, 2.4G bases, 1.5Gb downloads

External Id: JGI-SRA-5561
Submitted by: DOE Joint Genome Institute (JGI)
Study: Pseudomonas sp. URIL14HWK12:I2
show Abstracthide Abstract
This is a reference bacterial genome from a study to characterize how plant host genes affect the microbiome community assemblage and how the microbiome influences plant phenotypes, such as drought or salt tolerance, nutrient use, productivity, pathogen resistance, and yield. Plant-associated metagenomes are being characterized by 16S ribotyping, metagenome and reference genome sequencing and metatranscriptome sequencing. Experimental systems used to characterize the interplay between host and associated communities in different plant types have been chosen to be relevant to energy and environmental concerns, for example, Arabidopsis as a model, corn, and a key biofuel crop (Miscanthus).
Sample: Pseudomonas sp. URIL14HWK12:I2
SAMN05660839 • SRS1666350 • All experiments • All runs
Library:
Name: CXWW
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Regular (DNA)
Runs: 1 run, 8.1M spots, 2.4G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR41251578,127,9712.4G1.5Gb2016-09-02

ID:
3101916

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