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SRX1940504: Massilia sp. JGI 0001003-B8
1 ILLUMINA (Illumina HiSeq 2000) run: 3.3M spots, 980M bases, 621.3Mb downloads

External Id: JGI-SRA-18036
Submitted by: DOE Joint Genome Institute (JGI)
Study: Massilia sp. JGI 0001003-B08
show Abstracthide Abstract
Rhizosphere Grand Challenge Single Cell Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain genomes from both culturable and unculturable fractions of the Arabidopsis microbiome, rhizosphere and endosphere samples were disaggregated and individual cells sorted by flow cytometry and amplified by MDA, then microbes of interest were identified by 16S rRNA sequencing and their whole genomes sequenced. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
Sample: Generic sample from Massilia sp. JGI 0001003-B08
SAMN02440693 • SRS1559341 • All experiments • All runs
Name: BUCA
Instrument: Illumina HiSeq 2000
Strategy: WGA
Selection: MDA
Layout: PAIRED
Construction protocol: Unknown
Runs: 1 run, 3.3M spots, 980M bases, 621.3Mb
Run# of Spots# of BasesSizePublished


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