RNA-Seq of Hordeum spontaneum: Wadi Qilt, sample 8-4, 1980 - SRA

SRX5094100: RNA-Seq of Hordeum spontaneum: Wadi Qilt, sample 8-4, 1980
1 ILLUMINA (Illumina HiSeq 2500) run: 1.6M spots, 413.3M bases, 154.3Mb downloads

Design: RNA: Qiagen RNEasy Plant Mini, Library: Lexogen SENSE mRNA-Seq v2, Seq: Single HiSeq lane with SBS v4 2x125 bases

Submitted by: Agriculture & Agri-Food Canada

Study: Hordeum spontaneum Genome Sequencing Using RNA Seq

PRJNA507455 • SRP172445 • All experiments • All runs

show Abstracthide Abstract

Ten populations of wild barley (Hordeum spontaneum) were collected 28 years apart. Single nucleotide polymorphisms (SNPs) were detected using RNA Seq sequences. Focus was placed on those SNPs that were deleterious and associated with the two sample times to examine the change in diversity over time.

Sample: The tissue originated from seed that was increased once from seed collected either in 1980 or 2008.

SAMN10500158 • SRS4105709 • All experiments • All runs

Organism: Hordeum vulgare subsp. spontaneum

Library:

Name: B08-4_S30

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: PAIRED

Runs: 1 run, 1.6M spots, 413.3M bases, 154.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR8279203	1,640,216	413.3M	154.3Mb	2019-12-01

ID:: 6870562

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity