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SRX5025642: GSM3477862: d10_Tet; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 86M spots, 4.3G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: 10X single-cell RNASeq profiling of tumor-infiltrating CD8+ T-cells from B16-OVA mouse melanoma tumors
show Abstracthide Abstract
Distinct populations of progenitor exhausted (Tcf1+Tim-3-) and terminally exhausted (Tcf1-Tim-3+) CD8+ T-cells occur in B16-OVA tumors Overall design: Profiling of CD8+ T-cells from day 10 and day 20 B16-OVA mouse melanoma tumors
Sample: d10_Tet
SAMN10440640 • SRS4057142 • All experiments • All runs
Organism: Mus musculus
Instrument: NextSeq 500
Strategy: RNA-Seq
Selection: cDNA
Layout: PAIRED
Construction protocol: Tumors were dissected from the surrounding fascia, mechanically minced and treated with collagenase P and DNAse I for 10 minutes at 37C. Tumor-infiltrating leukocytes were enriched using Optiprep (Sigma) density gradient followed by CD8+ MACS positive selection (Miltenyi) and FACS isolation. Cells were counted and loaded onto the 10x device (10x Genomics). Library construction was performed as per standard 10x protocol (Manual CG00052 Rev B) 10X single-cell 3' RNA-seq v2
Experiment attributes:
GEO Accession: GSM3477862
Runs: 1 run, 86M spots, 4.3G bases, 3.2Gb
Run# of Spots# of BasesSizePublished


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