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SRX208116: GSM1048079: H3K27me3 ChIP-seq, seedling; Arabidopsis thaliana; ChIP-Seq
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 36.4M spots, 2.9G bases, 1.8Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Genome-wide profiling of long non-coding RNAs in Arabidopsis
show Abstracthide Abstract
We developed a stringent selection pipeline for lncRNA identification, combining high-throughput RNA sequencing and computational approaches. Using this pipeline, we annotated 1,353 lncRNAs in Arabidopsis thaliana. We further found that one fifth of the lncRNAs were associated with Polycomb repressive complex 2 (PRC2). Some PRC2-associated lncRNAs could repress the transcription of their neighboring genes through mediating histone H3 lysine 27 trimethylation. Overall design: Identification of Arabidopsis lncRNA through high throughput sequencing.
Sample: H3K27me3 ChIP-seq, seedling
SAMN01822148 • SRS378025 • All experiments • All runs
Instrument: Illumina Genome Analyzer IIx
Strategy: ChIP-Seq
Selection: ChIP
Layout: SINGLE
Experiment attributes:
GEO Accession: GSM1048079
External link:
Runs: 1 run, 36.4M spots, 2.9G bases, 1.8Gb
Run# of Spots# of BasesSizePublished


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