GSM2827534: Hi-C from endometrial microvascular endothelial cells (EN... - SRA

SRX3322599: GSM2827534: Hi-C from endometrial microvascular endothelial cells (ENCLB261ACF); Homo sapiens; Hi-C
57 ILLUMINA (Illumina HiSeq 2000) runs: 224.2M spots, 22.4G bases, 15.3Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS183PHZ

SAMN07790844 • SRS2627671 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: Hi-C

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: not provided

Experiment attributes:

GEO Accession: GSM2827534

Links:

NCBI link: NCBI Entrez (gds)

Runs: 57 runs, 224.2M spots, 22.4G bases, 15.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR6213730	4,000,000	400M	281.4Mb	2017-10-31
SRR6213731	4,000,000	400M	289.5Mb	2017-10-31
SRR6213732	4,000,000	400M	270.3Mb	2017-10-31
SRR6213733	4,000,000	400M	274.4Mb	2017-10-31
SRR6213734	4,000,000	400M	282.7Mb	2017-10-31
SRR6213735	4,000,000	400M	283.1Mb	2017-10-31
SRR6213736	4,000,000	400M	255.1Mb	2017-10-31
SRR6213737	4,000,000	400M	292.7Mb	2017-10-31
SRR6213738	4,000,000	400M	279.9Mb	2017-10-31
SRR6213739	4,000,000	400M	272.5Mb	2017-10-31
SRR6213740	4,000,000	400M	278.3Mb	2017-10-31
SRR6213741	4,000,000	400M	284.2Mb	2017-10-31
SRR6213742	4,000,000	400M	293Mb	2017-10-31
SRR6213743	4,000,000	400M	277.2Mb	2017-10-31
SRR6213744	4,000,000	400M	272.4Mb	2017-10-31
There are 42 omitted runs. See all runs in Run Selector.

ID:: 4651336

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