GSM2827296: Hi-C from ACHN (ENCLB341CZC); Homo sapiens; Hi-C - SRA

SRX3322373: GSM2827296: Hi-C from ACHN (ENCLB341CZC); Homo sapiens; Hi-C
34 ILLUMINA (Illumina HiSeq 2000) runs: 134.4M spots, 13.4G bases, 9.2Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS569UYK

SAMN06044724 • SRS1816078 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: Hi-C

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: not provided

Experiment attributes:

GEO Accession: GSM2827296

Links:

NCBI link: NCBI Entrez (gds)

Runs: 34 runs, 134.4M spots, 13.4G bases, 9.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR6213409	4,000,000	400M	283.8Mb	2017-10-31
SRR6213410	4,000,000	400M	290.3Mb	2017-10-31
SRR6213411	4,000,000	400M	251.7Mb	2017-10-31
SRR6213412	4,000,000	400M	258.1Mb	2017-10-31
SRR6213413	4,000,000	400M	291.8Mb	2017-10-31
SRR6213414	4,000,000	400M	281.3Mb	2017-10-31
SRR6213415	4,000,000	400M	247.7Mb	2017-10-31
SRR6213416	4,000,000	400M	284.2Mb	2017-10-31
SRR6213417	4,000,000	400M	258.2Mb	2017-10-31
SRR6213418	4,000,000	400M	276.5Mb	2017-10-31
SRR6213419	4,000,000	400M	243.8Mb	2017-10-31
SRR6213420	4,000,000	400M	296.1Mb	2017-10-31
SRR6213421	4,000,000	400M	286.3Mb	2017-10-31
SRR6213422	4,000,000	400M	297.6Mb	2017-10-31
SRR6213423	4,000,000	400M	293.6Mb	2017-10-31
There are 19 omitted runs. See all runs in Run Selector.

ID:: 4651110

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