GSM1613101: Baudin 24 h; Hordeum vulgare subsp. vulgare; RNA-Seq - SRA

SRX882901: GSM1613101: Baudin 24 h; Hordeum vulgare subsp. vulgare; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 18.8M spots, 3.4G bases, 2.2Gb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Next generation sequencing reveals gene transcription activities and alternative splicing events in germinating barley embryos

PRJNA275710 • SRP055128 • All experiments • All runs

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Seed germination triggers a transition of growth and metabolic activities from quiescent to active statuses. Germinating seeds is a good system to study many biological and biochemical processes including hormone metabolic activities and cell wall biosynthesis. Next generation sequence technology is used to study these processes. We have examined gene transcription activities and alternative splicing events in germinating embryos Overall design: We dissected barley embryos from four barley varieties at 2 time points 24 h and 48 h

Sample: Baudin 24 h

SAMN03352298 • SRS850267 • All experiments • All runs

Organism: Hordeum vulgare subsp. vulgare

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Total RNA was extracted and mRNA was isolated by oligodT column as described by manufactory RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM1613101

Links:

External link: GEO Sample GSM1613101

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 18.8M spots, 3.4G bases, 2.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR1810065	18,769,536	3.4G	2.2Gb	2016-02-18

ID:: 1264865

SRA

Sequence Read Archive

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