Zebrafish transcriptome profiling for proteogenomic analysis - SRA

SRX204106: Zebrafish transcriptome profiling for proteogenomic analysis
6 ILLUMINA (Illumina HiScanSQ) runs: 256.6M spots, 24.5G bases, 12.8Gb downloads

Design: SRR1562528 belongs to the eye tissue, SRR1562529 belongs to the intestine and pancreas tissue,SRR1562530 to the liver tissue,SRR1562531 belongs to the muscle tissue,SRR1562532 belongs to the spleen tissue,SRR1562533 belongs to the testis issue.

Submitted by: Johns Hopkins University

Study: Danio rerio strain:SAT Transcriptome or Gene expression

PRJNA179237 • SRP017135 • All experiments • All runs

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Transcriptomic analysis of zebrafish was carried out with the aim of refining genome annotation using proteogenomic strategy. RNA-seq analysis of six tissues (liver, muscle, eye, brain, intestine-pancreas and testes) was carried out along with proteomic analysis of 10 organs.

Sample: Zebrafish trancriptome for protegenomic analysis

SAMN01796005 • SRS373224 • All experiments • All runs

Organism: Danio rerio

Library:

Instrument: Illumina HiScanSQ

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: unspecified

Layout: PAIRED

Spot descriptor:

1 forward51 reverse

Runs: 6 runs, 256.6M spots, 24.5G bases, 12.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR1562528	41,246,200	3.9G	2Gb	2015-07-22
SRR1562529	34,528,793	3.3G	1.7Gb	2015-07-22
SRR1562530	52,047,991	5G	2.7Gb	2015-07-22
SRR1562531	45,714,707	4.4G	2.3Gb	2015-07-22
SRR1562532	38,182,310	3.6G	1.9Gb	2015-07-22
SRR1562533	44,832,788	4.2G	2.2Gb	2015-07-22

ID:: 274512

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