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SRX008026: Illumina Transcriptome Sequencing of L1 stage larvae
2 ILLUMINA (Illumina Genome Analyzer) runs: 35.1M spots, 5.3G bases, 3.2Gb downloads

Submitted by: Berkeley Drosophila Genome Project (BDGP)
Study: Developmental Time Course poly(A)+ RNA Profiling in D. melanogaster
show Abstracthide Abstract
Drosophila melanogaster is one of the most well studied genetic model organisms; nonetheless, its genome still contains unannotated coding and non-coding genes, transcripts, exons and RNA editing sites. Full discovery and annotation are pre-requisites for understanding how the regulation of transcription, splicing and RNA editing directs the development of this complex organism. Here we used RNA-Seq, tiling microarrays and cDNA sequencing to explore the transcriptome in 30 distinct developmental stages. We identified 111,195 new elements, including thousands of genes, coding and non-coding transcripts, exons, splicing and editing events, and inferred protein isoforms that previously eluded discovery using established experimental, prediction and conservation-based approaches. These data substantially expand the number of known transcribed elements in the Drosophila genome and provide a high-resolution view of transcriptome dynamics throughout development.
Sample: Generic sample from Drosophila melanogaster
SAMN00003035 • SRS004680 • All experiments • All runs
Library:
Name: D.mel. L1 stage larvae
Instrument: Illumina Genome Analyzer
Strategy: EST
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Spot descriptor:
forward77  reverse

Runs: 2 runs, 35.1M spots, 5.3G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR02359716,957,1862.6G1.6Gb2009-09-15
SRR03541018,100,6602.8G1.6Gb2010-02-11

ID:
8305

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