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SRX202839: Clostridium thermocellum 27405 RNA Seq (Illumina HiSeq2000) from Populus and Switch grass fermentations
8 ILLUMINA (Illumina HiSeq 2000) runs: 828.4M spots, 42.3G bases, 28.4Gb downloads

Design: Total RNA was depleted of ribosomal RNA (rRNA) with the Ribo-Zero rRNA removal kit for Gram Positive bacteria (Epicentre,WI) following the manufactures instructions. Libraries were prepared with the rRNA depleted material using the ScriptSeq mRNA-Seq Library Preparation kit (Epicentre,WI) following the manufacturer’s instructions. Libraries were assessed with an Agilent bioanalyzer High Sensitivity Assay (Agilent, CA).
Submitted by: Oak Ridge National Laboratory
Study: Ruminiclostridium thermocellum 27405 Transcriptome or Gene expression
show Abstracthide Abstract
Investigation of Clostridium thermocellum 27405 transcriptomics during fermentation on switch grass and populus. Clostridium thermocellum 27405 is an anaerobic, thermophilic, cellulolytic, and ethanogenic bacterium capable of directly converting cellulosic substrate into ethanol.
Sample: Clostridium thermocellum 27405 RNA Seq (Illumina HiSeq2000) from Populus and switchgrass fermentations
SAMN01797687 • SRS373637 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 8 runs, 828.4M spots, 42.3G bases, 28.4Gb
Run# of Spots# of BasesSizePublished
SRR62021999,732,6255.1G3.4Gb2013-05-15
SRR62021897,648,6335G3.3Gb2013-05-15
SRR620532102,205,6855.2G3.5Gb2013-05-15
SRR620327115,058,2495.9G4Gb2013-05-15
SRR62032595,036,1364.8G3.2Gb2013-05-15
SRR620324108,702,4845.5G3.8Gb2013-05-15
SRR620238108,887,6215.6G3.8Gb2013-05-15
SRR620229101,168,6555.2G3.4Gb2013-05-15

ID:
270183

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