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SRX25665138: WGS of H5N1
1 ILLUMINA (NextSeq 2000) run: 669,371 spots, 197.1M bases, 66.3Mb downloads

Design: WGS of H5N1
Submitted by: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories (USDA-NVSL)
Study: U.S. H5N1 clade 2.3.4.4b immediate releases related to emergence and spread in dairy cattle
show Abstracthide Abstract
The intent of this Bioproject is to rapidly share sequences in the interest of public transparency and represent affected cattle herds, poultry premises, peridomestic animals, as well as sequences from wild animals that support the phylogeny. Because of the rapidity of sequence sharing, epidemiological investigations may still be underway, consequently sequences are initially shared publicly with limited metadata. Officials directly involved in investigations, including scientists within USDA, Centers for Disease Control and Preventions, and State officials are provided complete metadata to assist with their investigations. As responding officials complete their investigations, additional metadata will be made available through publications and other communications. https://www.biorxiv.org/content/10.1101/2024.05.01.591751v1
Sample:
SAMN43033078 • SRS22307633 • All experiments • All runs
Library:
Name: 24-020717-001-original
Instrument: NextSeq 2000
Strategy: WGS
Source: VIRAL RNA
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 669,371 spots, 197.1M bases, 66.3Mb
Run# of Spots# of BasesSizePublished
SRR30202034669,371197.1M66.3Mb2024-08-11

ID:
34683347

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