Format

Send to:

Choose Destination

SRX039675: Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
1 ILLUMINA (Illumina Genome Analyzer II) run: 13.6M spots, 1.4G bases, 895.1Mb downloads

Design: Ribosomal RNA was depleted from total RNA before cDNA synthesis using Invitrogen Ribominus Kit. The sequencing library was constructed following Illumina RNA-Seq protocols.
Submitted by: UNIVERSITI KEBANGSAAN MALAYSIA
Study: Transcriptome Sequencing of Acacia auriculiformis and Acacia mangium
show Abstracthide Abstract
Acacia auriculiformis x Acacia mangium hybrids are commercially important trees for the timber and pulp industry in Southeast Asia. Increasing pulp yield while reducing pulping costs are major objectives of tree breeding programs. The general monolignol biosynthesis and wood-related pathways are well-characterized but genes in these pathways are poorly characterized in Acacia hybrids. RNA-seq on short-read platforms for A. auriculiformis and A. mangium is a rapid approach for obtaining comprehensive transcriptomic data and to discover informative sequence variants.
Sample: Acacia auriculiformis AA6
SAMN00199232 • SRS160846 • All experiments • All runs
Library:
Name: Acacia auriculiformis
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Spot descriptor:
forward52  reverse

Runs: 1 run, 13.6M spots, 1.4G bases, 895.1Mb
Run# of Spots# of BasesSizePublished
SRR09831513,648,1541.4G895.1Mb2011-07-05

ID:
47114

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Write to the Help Desk