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SRX14474111: GSM5956889: Tes45; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 26.6M spots, 8G bases, 2.4Gb downloads

External Id: GSM5956889_r1
Submitted by: University of Arkansas
Study: Impact of Bisphenol-A on the Spliceosome and Meiosis of Sperm in the Testis of Adolescent Mice
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Background:Bisphenol-A (BPA) has estrogenic activity and adversely affects humans and animals' reproductive systems and functions. There has been a disagreement with the safety of BPA exposure at Tolerable daily intake (TDI) (0.05 mg/kg/d) value and non-observed adverse effect level (5 mg/kg/d). The current study investigated the effects of BPA exposure at various doses starting from Tolerable daily intake (0.05 mg/kg/d) to the lowest observed adverse effect level (50 mg/kg/d) on the testis development in male mice offspring. The BPA exposure lasted for 63 days from pregnancy day 0 of the dams to post-natal day (PND) 45 of the offspring. Results:The results showed that BPA exposure significantly increased testis and serum BPA contents of PND 45 mice. The spermatogenic cells became loose, and the lumen of seminiferous tubules enlarged when BPA exposure at 0.05 mg/kg/d TDI. BPA exposure at a low dose (0.05 mg/kg/d) significantly reduced the expression of Scp3 proteins and elevated sperm abnormality. The significant decrease in Scp3 suggested that BPA inhibits the transformation of spermatogonia into spermatozoa in the testis. The RNA-seq proved that the spliceosome was significantly inhibited in the testes of mice exposed to BPA. According to the RT-qPCR, BPA exposure significantly reduced the expression of Snrpc and Hnrnpu. Conclusions:This study indicated that long-term BPA exposure at Tolerable daily intake (0.05 mg/kg/d) is not safe because low-dose long-term exposure to BPA inhibits spermatogonial meiosis in mice testis impairs reproductive function in male offspring. Overall design: Examination of BPA on testicular gene expression in mice, 3 samples in each group were mixed then sequencing.
Sample: Tes45
SAMN26725167 • SRS12275308 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM5956889
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: After the testis was collected , flash frozen on dry ice, and RNA was harvested using Trizol reagent.Then 1 ug of total RNA for the construction of sequencing libraries. Use magnetic beads with Oligo (dT) to enrich RNA, add fragmentation buffer to convert RNA into short fragments, then use random hexamers to synthesize single-stranded cDNA, use DNA polymerase I to synthesize double-stranded cDNA, and then use AMPure XP beads to purify double-stranded cDNA. The purified double-stranded cDNA is then subjected to end repair, A tail is added, and a sequencing adapter is connected. Then, AMPure XP beads are used for fragment size selection, and finally PCR enrichment is performed to obtain the final cDNA library.
Runs: 1 run, 26.6M spots, 8G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR1833798226,578,4428G2.4Gb2022-03-19

ID:
20655315

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