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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the Aliases tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs6684760

Current Build 153

Released July 9, 2019

Organism
Homo sapiens
Position
chr1:241294929 (GRCh38.p12) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>C
Variation Type
SNV Single Nucleotide Variation
Frequency
C=0.13233 (16617/125568, TOPMED)
C=0.1306 (4096/31366, GnomAD)
C=0.125 (624/5008, 1000G) (+ 4 more)
C=0.167 (747/4480, Estonian)
C=0.145 (557/3854, ALSPAC)
C=0.143 (532/3708, TWINSUK)
C=0.10 (60/600, NorthernSweden)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
RGS7 : Intron Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p12 chr 1 NC_000001.11:g.241294929G>C
GRCh37.p13 chr 1 NC_000001.10:g.241458229G>C
Gene: RGS7, regulator of G protein signaling 7 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
RGS7 transcript variant 2 NM_001282773.2:c. N/A Intron Variant
RGS7 transcript variant 3 NM_001282775.2:c. N/A Intron Variant
RGS7 transcript variant 4 NM_001282778.2:c. N/A Intron Variant
RGS7 transcript variant 5 NM_001350113.1:c. N/A Intron Variant
RGS7 transcript variant 6 NM_001350114.1:c. N/A Intron Variant
RGS7 transcript variant 7 NM_001350115.1:c. N/A Intron Variant
RGS7 transcript variant 8 NM_001350116.1:c. N/A Intron Variant
RGS7 transcript variant 9 NM_001364886.1:c. N/A Intron Variant
RGS7 transcript variant 1 NM_002924.6:c. N/A Intron Variant
RGS7 transcript variant X2 XM_017002001.2:c. N/A Intron Variant
RGS7 transcript variant X3 XM_017002002.2:c. N/A Intron Variant
RGS7 transcript variant X7 XM_017002003.2:c. N/A Intron Variant
RGS7 transcript variant X8 XM_017002004.2:c. N/A Intron Variant
RGS7 transcript variant X9 XM_017002005.2:c. N/A Intron Variant
RGS7 transcript variant X4 XM_006711800.4:c. N/A Genic Upstream Transcript Variant
RGS7 transcript variant X5 XM_011544246.3:c. N/A Genic Upstream Transcript Variant
RGS7 transcript variant X6 XM_011544247.3:c. N/A Genic Upstream Transcript Variant
RGS7 transcript variant X10 XM_017002009.1:c. N/A Genic Upstream Transcript Variant
RGS7 transcript variant X11 XM_017002011.2:c. N/A Genic Upstream Transcript Variant
RGS7 transcript variant X12 XM_017002012.2:c. N/A Genic Upstream Transcript Variant
RGS7 transcript variant X13 XM_017002013.1:c. N/A Genic Upstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 125568 G=0.86767 C=0.13233
gnomAD - Genomes Global Study-wide 31366 G=0.8694 C=0.1306
gnomAD - Genomes European Sub 18876 G=0.8605 C=0.1395
gnomAD - Genomes African Sub 8708 G=0.896 C=0.104
gnomAD - Genomes East Asian Sub 1558 G=0.858 C=0.142
gnomAD - Genomes Other Sub 1088 G=0.869 C=0.131
gnomAD - Genomes American Sub 846 G=0.85 C=0.15
gnomAD - Genomes Ashkenazi Jewish Sub 290 G=0.79 C=0.21
1000Genomes Global Study-wide 5008 G=0.875 C=0.125
1000Genomes African Sub 1322 G=0.909 C=0.091
1000Genomes East Asian Sub 1008 G=0.839 C=0.161
1000Genomes Europe Sub 1006 G=0.868 C=0.132
1000Genomes South Asian Sub 978 G=0.90 C=0.10
1000Genomes American Sub 694 G=0.84 C=0.16
Genetic variation in the Estonian population Estonian Study-wide 4480 G=0.833 C=0.167
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 G=0.855 C=0.145
UK 10K study - Twins TWIN COHORT Study-wide 3708 G=0.857 C=0.143
Northern Sweden ACPOP Study-wide 600 G=0.90 C=0.10
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= C Note
GRCh38.p12 chr 1 NC_000001.11:g.241294929= NC_000001.11:g.24129492...

NC_000001.11:g.241294929G>C

GRCh37.p13 chr 1 NC_000001.10:g.241458229= NC_000001.10:g.24145822...

NC_000001.10:g.241458229G>C

Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

45 SubSNP, 7 Frequency submissions
No Submitter Submission ID Date (Build)
1 BCM_SSAHASNP ss9866104 Jul 11, 2003 (116)
2 CSHL-HAPMAP ss16444816 Feb 27, 2004 (120)
3 ABI ss41304979 Mar 15, 2006 (126)
4 AFFY ss66116429 Dec 01, 2006 (127)
5 CSHL-HAPMAP ss68363080 Jan 12, 2007 (127)
6 PERLEGEN ss68799121 May 18, 2007 (127)
7 AFFY ss76103682 Dec 06, 2007 (129)
8 KRIBB_YJKIM ss82288242 Dec 16, 2007 (130)
9 1000GENOMES ss109093530 Jan 23, 2009 (130)
10 ENSEMBL ss161235257 Dec 01, 2009 (131)
11 AFFY ss172517851 Jul 04, 2010 (132)
12 BUSHMAN ss199841067 Jul 04, 2010 (132)
13 1000GENOMES ss218979482 Jul 14, 2010 (132)
14 1000GENOMES ss230975636 Jul 14, 2010 (132)
15 1000GENOMES ss238575146 Jul 15, 2010 (132)
16 GMI ss276290056 May 04, 2012 (137)
17 PJP ss290771302 May 09, 2011 (134)
18 TISHKOFF ss555255292 Apr 25, 2013 (138)
19 SSMP ss648829404 Apr 25, 2013 (138)
20 EVA-GONL ss976333646 Aug 21, 2014 (142)
21 JMKIDD_LAB ss1068744981 Aug 21, 2014 (142)
22 1000GENOMES ss1295345805 Aug 21, 2014 (142)
23 EVA_GENOME_DK ss1574800718 Apr 01, 2015 (144)
24 EVA_DECODE ss1585737873 Apr 01, 2015 (144)
25 EVA_UK10K_ALSPAC ss1602513565 Apr 01, 2015 (144)
26 EVA_UK10K_TWINSUK ss1645507598 Apr 01, 2015 (144)
27 EVA_SVP ss1712420148 Apr 01, 2015 (144)
28 WEILL_CORNELL_DGM ss1919555383 Feb 12, 2016 (147)
29 GENOMED ss1967018665 Jul 19, 2016 (147)
30 JJLAB ss2020305376 Sep 14, 2016 (149)
31 USC_VALOUEV ss2148343367 Dec 20, 2016 (150)
32 HUMAN_LONGEVITY ss2171518194 Dec 20, 2016 (150)
33 TOPMED ss2334170951 Dec 20, 2016 (150)
34 SYSTEMSBIOZJU ss2624666079 Nov 08, 2017 (151)
35 GRF ss2698347048 Nov 08, 2017 (151)
36 GNOMAD ss2768167502 Nov 08, 2017 (151)
37 SWEGEN ss2988740691 Nov 08, 2017 (151)
38 BIOINF_KMB_FNS_UNIBA ss3023915144 Nov 08, 2017 (151)
39 TOPMED ss3107858180 Nov 08, 2017 (151)
40 CSHL ss3343997522 Nov 08, 2017 (151)
41 EGCUT_WGS ss3656701976 Jul 12, 2019 (153)
42 EVA_DECODE ss3688980620 Jul 12, 2019 (153)
43 ACPOP ss3728020961 Jul 12, 2019 (153)
44 EVA ss3747556175 Jul 12, 2019 (153)
45 KHV_HUMAN_GENOMES ss3800559832 Jul 12, 2019 (153)
46 1000Genomes NC_000001.10 - 241458229 Oct 11, 2018 (152)
47 The Avon Longitudinal Study of Parents and Children NC_000001.10 - 241458229 Oct 11, 2018 (152)
48 Genetic variation in the Estonian population NC_000001.10 - 241458229 Oct 11, 2018 (152)
49 gnomAD - Genomes NC_000001.10 - 241458229 Jul 12, 2019 (153)
50 Northern Sweden NC_000001.10 - 241458229 Jul 12, 2019 (153)
51 TopMed NC_000001.11 - 241294929 Oct 11, 2018 (152)
52 UK 10K study - Twins NC_000001.10 - 241458229 Oct 11, 2018 (152)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs61444299 Feb 27, 2009 (130)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss66116429, ss76103682, ss109093530, ss172517851, ss199841067, ss276290056, ss290771302, ss1585737873, ss1712420148 NC_000001.9:239524851:G:C NC_000001.11:241294928:G:C (self)
6226491, 3450453, 2440224, 16992064, 1305826, 3450453, ss218979482, ss230975636, ss238575146, ss555255292, ss648829404, ss976333646, ss1068744981, ss1295345805, ss1574800718, ss1602513565, ss1645507598, ss1919555383, ss1967018665, ss2020305376, ss2148343367, ss2334170951, ss2624666079, ss2698347048, ss2768167502, ss2988740691, ss3343997522, ss3656701976, ss3728020961, ss3747556175 NC_000001.10:241458228:G:C NC_000001.11:241294928:G:C (self)
33429371, ss2171518194, ss3023915144, ss3107858180, ss3688980620, ss3800559832 NC_000001.11:241294928:G:C NC_000001.11:241294928:G:C (self)
ss9866104 NT_004836.14:6201587:G:C NC_000001.11:241294928:G:C (self)
ss16444816 NT_004836.15:6216017:G:C NC_000001.11:241294928:G:C (self)
ss41304979, ss68363080, ss68799121, ss82288242, ss161235257 NT_167186.1:34976007:G:C NC_000001.11:241294928:G:C (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs6684760

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post308+0fe9b3b