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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the Aliases tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.


Current Build 153

Released July 9, 2019

Homo sapiens
chr12:120565821 (GRCh38.p12) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Variation Type
SNV Single Nucleotide Variation
T=0.00003 (4/125568, TOPMED)
T=0.000 (2/5008, 1000G)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
RNF10 : Intron Variant
0 citations
Genomic View
See rs on genome

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p12 chr 12 NC_000012.12:g.120565821C>T
GRCh37.p13 chr 12 NC_000012.11:g.121003624C>T
Gene: RNF10, ring finger protein 10 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
RNF10 transcript variant 2 NM_001330474.2:c. N/A Intron Variant
RNF10 transcript variant 1 NM_014868.5:c. N/A Intron Variant
RNF10 transcript variant X1 XM_005254013.2:c. N/A Intron Variant
RNF10 transcript variant X2 XM_017020282.1:c. N/A Intron Variant
RNF10 transcript variant X5 XM_017020283.2:c. N/A Intron Variant
RNF10 transcript variant X4 XR_001748933.2:n. N/A Intron Variant
RNF10 transcript variant X6 XR_001748934.2:n. N/A Intron Variant
RNF10 transcript variant X7 XR_001748935.2:n. N/A Intron Variant
RNF10 transcript variant X9 XR_001748936.2:n. N/A Intron Variant
RNF10 transcript variant X10 XR_001748937.2:n. N/A Intron Variant
RNF10 transcript variant X11 XR_001748938.2:n. N/A Intron Variant
RNF10 transcript variant X12 XR_001748939.1:n. N/A Intron Variant
RNF10 transcript variant X8 XR_243026.4:n. N/A Intron Variant
RNF10 transcript variant X3 XR_944849.3:n. N/A Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 125568 C=0.99997 T=0.00003
1000Genomes Global Study-wide 5008 C=1.000 T=0.000
1000Genomes African Sub 1322 C=1.000 T=0.000
1000Genomes East Asian Sub 1008 C=1.000 T=0.000
1000Genomes Europe Sub 1006 C=1.000 T=0.000
1000Genomes South Asian Sub 978 C=1.00 T=0.00
1000Genomes American Sub 694 C=1.00 T=0.00

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= T Note
GRCh38.p12 chr 12 NC_000012.12:g.120565821= NC_000012.12:g.12056582...


GRCh37.p13 chr 12 NC_000012.11:g.121003624= NC_000012.11:g.12100362...



Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

4 SubSNP, 2 Frequency submissions
No Submitter Submission ID Date (Build)
1 1000GENOMES ss1346908456 Aug 21, 2014 (142)
2 HUMAN_LONGEVITY ss2193754551 Dec 20, 2016 (150)
3 TOPMED ss2357777556 Dec 20, 2016 (150)
4 TOPMED ss3183425639 Nov 08, 2017 (151)
5 1000Genomes NC_000012.11 - 121003624 Oct 12, 2018 (152)
6 TopMed NC_000012.12 - 120565821 Oct 12, 2018 (152)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
59729228, ss1346908456, ss2357777556 NC_000012.11:121003623:C:T NC_000012.12:120565820:C:T (self)
94226992, ss2193754551, ss3183425639 NC_000012.12:120565820:C:T NC_000012.12:120565820:C:T (self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs567371153

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post308+0fe9b3b