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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2269772

Current Build 155

Released April 9, 2021

Organism
Homo sapiens
Position
chr17:50072022 (GRCh38.p13) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>T
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.198576 (52561/264690, TOPMED)
T=0.167099 (41908/250798, GnomAD_exome)
T=0.114077 (21290/186628, ALFA) (+ 20 more)
T=0.184173 (25775/139950, GnomAD)
T=0.168223 (20317/120774, ExAC)
T=0.32094 (5379/16760, 8.3KJPN)
T=0.17184 (2235/13006, GO-ESP)
T=0.2466 (1235/5008, 1000G)
T=0.1004 (450/4480, Estonian)
T=0.0828 (319/3854, ALSPAC)
T=0.0895 (332/3708, TWINSUK)
T=0.3240 (946/2920, KOREAN)
T=0.2516 (476/1892, HapMap)
T=0.090 (90/998, GoNL)
T=0.260 (163/626, Chileans)
T=0.320 (194/606, Vietnamese)
T=0.088 (53/600, NorthernSweden)
T=0.135 (72/534, MGP)
T=0.099 (30/302, FINRISK)
C=0.389 (88/226, SGDP_PRJ)
T=0.153 (33/216, Qatari)
T=0.03 (1/40, GENOME_DK)
C=0.44 (7/16, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
ITGA3 : Synonymous Variant
Publications
3 citations
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p13 chr 17 NC_000017.11:g.50072022C>T
GRCh37.p13 chr 17 NC_000017.10:g.48149386C>T
ITGA3 RefSeqGene NG_029107.2:g.21047C>T
Gene: ITGA3, integrin subunit alpha 3 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
ITGA3 transcript NM_002204.4:c.996C>T F [TTC] > F [TTT] Coding Sequence Variant
integrin alpha-3 preproprotein NP_002195.1:p.Phe332= F (Phe) > F (Phe) Synonymous Variant
ITGA3 transcript variant X1 XM_005257308.2:c.751+1092…

XM_005257308.2:c.751+1092C>T

N/A Intron Variant
ITGA3 transcript variant X2 XR_001752507.1:n.1371C>T N/A Non Coding Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20201027095038
Population Group Sample Size Ref Allele Alt Allele
Total Global 186628 C=0.885923 T=0.114077
European Sub 154742 C=0.907291 T=0.092709
African Sub 7980 C=0.6703 T=0.3297
African Others Sub 262 C=0.553 T=0.447
African American Sub 7718 C=0.6743 T=0.3257
Asian Sub 732 C=0.684 T=0.316
East Asian Sub 538 C=0.680 T=0.320
Other Asian Sub 194 C=0.696 T=0.304
Latin American 1 Sub 1250 C=0.7976 T=0.2024
Latin American 2 Sub 8470 C=0.7664 T=0.2336
South Asian Sub 196 C=0.791 T=0.209
Other Sub 13258 C=0.86355 T=0.13645


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.801424 T=0.198576
gnomAD - Exomes Global Study-wide 250798 C=0.832901 T=0.167099
gnomAD - Exomes European Sub 134894 C=0.906275 T=0.093725
gnomAD - Exomes Asian Sub 48980 C=0.73340 T=0.26660
gnomAD - Exomes American Sub 34522 C=0.75004 T=0.24996
gnomAD - Exomes African Sub 16238 C=0.65636 T=0.34364
gnomAD - Exomes Ashkenazi Jewish Sub 10042 C=0.88727 T=0.11273
gnomAD - Exomes Other Sub 6122 C=0.8585 T=0.1415
gnomAD - Genomes Global Study-wide 139950 C=0.815827 T=0.184173
gnomAD - Genomes European Sub 75830 C=0.90948 T=0.09052
gnomAD - Genomes African Sub 41896 C=0.66376 T=0.33624
gnomAD - Genomes American Sub 13622 C=0.77874 T=0.22126
gnomAD - Genomes Ashkenazi Jewish Sub 3322 C=0.8835 T=0.1165
gnomAD - Genomes East Asian Sub 3132 C=0.6753 T=0.3247
gnomAD - Genomes Other Sub 2148 C=0.8110 T=0.1890
ExAC Global Study-wide 120774 C=0.831777 T=0.168223
ExAC Europe Sub 72938 C=0.90321 T=0.09679
ExAC Asian Sub 25034 C=0.73428 T=0.26572
ExAC American Sub 11532 C=0.74766 T=0.25234
ExAC African Sub 10374 C=0.65722 T=0.34278
ExAC Other Sub 896 C=0.845 T=0.155
8.3KJPN JAPANESE Study-wide 16760 C=0.67906 T=0.32094
GO Exome Sequencing Project Global Study-wide 13006 C=0.82816 T=0.17184
GO Exome Sequencing Project European American Sub 8600 C=0.9094 T=0.0906
GO Exome Sequencing Project African American Sub 4406 C=0.6695 T=0.3305
1000Genomes Global Study-wide 5008 C=0.7534 T=0.2466
1000Genomes African Sub 1322 C=0.6589 T=0.3411
1000Genomes East Asian Sub 1008 C=0.7222 T=0.2778
1000Genomes Europe Sub 1006 C=0.9274 T=0.0726
1000Genomes South Asian Sub 978 C=0.731 T=0.269
1000Genomes American Sub 694 C=0.758 T=0.242
Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.8996 T=0.1004
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.9172 T=0.0828
UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.9105 T=0.0895
KOREAN population from KRGDB KOREAN Study-wide 2920 C=0.6760 T=0.3240
HapMap Global Study-wide 1892 C=0.7484 T=0.2516
HapMap American Sub 770 C=0.797 T=0.203
HapMap African Sub 692 C=0.660 T=0.340
HapMap Asian Sub 254 C=0.693 T=0.307
HapMap Europe Sub 176 C=0.960 T=0.040
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.910 T=0.090
Chileans Chilean Study-wide 626 C=0.740 T=0.260
A Vietnamese Genetic Variation Database Global Study-wide 606 C=0.680 T=0.320
Northern Sweden ACPOP Study-wide 600 C=0.912 T=0.088
Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 C=0.865 T=0.135
FINRISK Finnish from FINRISK project Study-wide 302 C=0.901 T=0.099
SGDP_PRJ Global Study-wide 226 C=0.389 T=0.611
Qatari Global Study-wide 216 C=0.847 T=0.153
The Danish reference pan genome Danish Study-wide 40 C=0.97 T=0.03
Siberian Global Study-wide 16 C=0.44 T=0.56
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= T
GRCh38.p13 chr 17 NC_000017.11:g.50072022= NC_000017.11:g.50072022C>T
GRCh37.p13 chr 17 NC_000017.10:g.48149386= NC_000017.10:g.48149386C>T
ITGA3 RefSeqGene NG_029107.2:g.21047= NG_029107.2:g.21047C>T
ITGA3 transcript NM_002204.4:c.996= NM_002204.4:c.996C>T
ITGA3 transcript NM_002204.3:c.996= NM_002204.3:c.996C>T
ITGA3 transcript variant a NM_002204.2:c.996= NM_002204.2:c.996C>T
ITGA3 transcript variant b NM_005501.2:c.996= NM_005501.2:c.996C>T
ITGA3 transcript variant X2 XR_001752507.1:n.1371= XR_001752507.1:n.1371C>T
integrin alpha-3 preproprotein NP_002195.1:p.Phe332= NP_002195.1:p.Phe332=
integrin alpha-3 isoform b precursor NP_005492.1:p.Phe332= NP_005492.1:p.Phe332=
ITGA3 transcript variant X1 XM_005257308.1:c.751+1092= XM_005257308.1:c.751+1092C>T
ITGA3 transcript variant X1 XM_005257308.2:c.751+1092= XM_005257308.2:c.751+1092C>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

103 SubSNP, 23 Frequency submissions
No Submitter Submission ID Date (Build)
1 YUSUKE ss3203983 Sep 28, 2001 (100)
2 SC_SNP ss16188630 Feb 27, 2004 (120)
3 CSHL-HAPMAP ss20042803 Feb 27, 2004 (120)
4 PERLEGEN ss23638594 Sep 20, 2004 (123)
5 ILLUMINA ss65733525 Oct 16, 2006 (127)
6 AFFY ss66531752 Dec 02, 2006 (127)
7 ILLUMINA ss74882533 Dec 06, 2007 (129)
8 AFFY ss76354200 Dec 06, 2007 (129)
9 CGM_KYOTO ss76878316 Dec 06, 2007 (129)
10 KRIBB_YJKIM ss81744521 Dec 14, 2007 (130)
11 CORNELL ss86239300 Mar 23, 2008 (129)
12 CNG ss95210828 Mar 25, 2008 (129)
13 BGI ss103348545 Dec 01, 2009 (131)
14 1000GENOMES ss113592788 Jan 25, 2009 (130)
15 SEATTLESEQ ss159735790 Dec 01, 2009 (131)
16 ILLUMINA ss160524517 Dec 01, 2009 (131)
17 COMPLETE_GENOMICS ss169745271 Jul 04, 2010 (132)
18 ILLUMINA ss173228976 Jul 04, 2010 (132)
19 AFFY ss173363013 Jul 04, 2010 (132)
20 BUSHMAN ss202576236 Jul 04, 2010 (132)
21 BCM-HGSC-SUB ss207989470 Jul 04, 2010 (132)
22 1000GENOMES ss227567325 Jul 14, 2010 (132)
23 1000GENOMES ss237260555 Jul 15, 2010 (132)
24 1000GENOMES ss243553001 Jul 15, 2010 (132)
25 GMI ss282781862 May 04, 2012 (137)
26 NHLBI-ESP ss342458048 May 09, 2011 (134)
27 ILLUMINA ss480494165 May 04, 2012 (137)
28 ILLUMINA ss480508501 May 04, 2012 (137)
29 ILLUMINA ss481312359 Sep 08, 2015 (146)
30 ILLUMINA ss485044592 May 04, 2012 (137)
31 1000GENOMES ss491126594 May 04, 2012 (137)
32 CLINSEQ_SNP ss491739163 May 04, 2012 (137)
33 ILLUMINA ss537065353 Sep 08, 2015 (146)
34 TISHKOFF ss565299226 Apr 25, 2013 (138)
35 SSMP ss661107301 Apr 25, 2013 (138)
36 ILLUMINA ss778488593 Sep 08, 2015 (146)
37 ILLUMINA ss782968519 Sep 08, 2015 (146)
38 ILLUMINA ss783930254 Sep 08, 2015 (146)
39 ILLUMINA ss832224810 Sep 08, 2015 (146)
40 ILLUMINA ss833944560 Sep 08, 2015 (146)
41 JMKIDD_LAB ss974499378 Aug 21, 2014 (142)
42 EVA-GONL ss993156635 Aug 21, 2014 (142)
43 JMKIDD_LAB ss1067572748 Aug 21, 2014 (142)
44 JMKIDD_LAB ss1081089527 Aug 21, 2014 (142)
45 1000GENOMES ss1358845313 Aug 21, 2014 (142)
46 DDI ss1428045713 Apr 01, 2015 (144)
47 EVA_GENOME_DK ss1578176783 Apr 01, 2015 (144)
48 EVA_FINRISK ss1584107152 Apr 01, 2015 (144)
49 EVA_UK10K_ALSPAC ss1635743732 Apr 01, 2015 (144)
50 EVA_UK10K_TWINSUK ss1678737765 Apr 01, 2015 (144)
51 EVA_EXAC ss1692850295 Apr 01, 2015 (144)
52 EVA_DECODE ss1697200053 Apr 01, 2015 (144)
53 EVA_MGP ss1711465132 Apr 01, 2015 (144)
54 EVA_SVP ss1713585715 Apr 01, 2015 (144)
55 ILLUMINA ss1752229131 Sep 08, 2015 (146)
56 HAMMER_LAB ss1808803315 Sep 08, 2015 (146)
57 WEILL_CORNELL_DGM ss1936619003 Feb 12, 2016 (147)
58 JJLAB ss2029085312 Sep 14, 2016 (149)
59 USC_VALOUEV ss2157561514 Dec 20, 2016 (150)
60 HUMAN_LONGEVITY ss2217212444 Dec 20, 2016 (150)
61 TOPMED ss2382367914 Dec 20, 2016 (150)
62 SYSTEMSBIOZJU ss2629038241 Nov 08, 2017 (151)
63 ILLUMINA ss2633402235 Nov 08, 2017 (151)
64 GRF ss2702121442 Nov 08, 2017 (151)
65 GNOMAD ss2742831113 Nov 08, 2017 (151)
66 GNOMAD ss2749808752 Nov 08, 2017 (151)
67 GNOMAD ss2950457790 Nov 08, 2017 (151)
68 AFFY ss2985733570 Nov 08, 2017 (151)
69 SWEGEN ss3015621312 Nov 08, 2017 (151)
70 BIOINF_KMB_FNS_UNIBA ss3028364426 Nov 08, 2017 (151)
71 TOPMED ss3264180285 Nov 08, 2017 (151)
72 CSHL ss3351765516 Nov 08, 2017 (151)
73 ILLUMINA ss3627680900 Oct 12, 2018 (152)
74 ILLUMINA ss3631382947 Oct 12, 2018 (152)
75 ILLUMINA ss3633142958 Oct 12, 2018 (152)
76 ILLUMINA ss3633850611 Oct 12, 2018 (152)
77 ILLUMINA ss3634678113 Oct 12, 2018 (152)
78 ILLUMINA ss3635538324 Oct 12, 2018 (152)
79 ILLUMINA ss3636367561 Oct 12, 2018 (152)
80 ILLUMINA ss3637289879 Oct 12, 2018 (152)
81 ILLUMINA ss3638164647 Oct 12, 2018 (152)
82 ILLUMINA ss3640385423 Oct 12, 2018 (152)
83 ILLUMINA ss3643142855 Oct 12, 2018 (152)
84 OMUKHERJEE_ADBS ss3646513448 Oct 12, 2018 (152)
85 EGCUT_WGS ss3682494801 Jul 13, 2019 (153)
86 EVA_DECODE ss3700566390 Jul 13, 2019 (153)
87 ACPOP ss3742068642 Jul 13, 2019 (153)
88 ILLUMINA ss3744978392 Jul 13, 2019 (153)
89 EVA ss3754724881 Jul 13, 2019 (153)
90 ILLUMINA ss3772476219 Jul 13, 2019 (153)
91 KHV_HUMAN_GENOMES ss3819991620 Jul 13, 2019 (153)
92 EVA ss3825128290 Apr 27, 2020 (154)
93 EVA ss3825902252 Apr 27, 2020 (154)
94 EVA ss3834892754 Apr 27, 2020 (154)
95 SGDP_PRJ ss3885854005 Apr 27, 2020 (154)
96 KRGDB ss3935569161 Apr 27, 2020 (154)
97 FSA-LAB ss3984118396 Apr 26, 2021 (155)
98 EVA ss3986075091 Apr 26, 2021 (155)
99 EVA ss3986732201 Apr 26, 2021 (155)
100 EVA ss4017769501 Apr 26, 2021 (155)
101 TOPMED ss5037691513 Apr 26, 2021 (155)
102 TOMMO_GENOMICS ss5222666925 Apr 26, 2021 (155)
103 EVA ss5236944305 Apr 26, 2021 (155)
104 1000Genomes NC_000017.10 - 48149386 Oct 12, 2018 (152)
105 The Avon Longitudinal Study of Parents and Children NC_000017.10 - 48149386 Oct 12, 2018 (152)
106 Chileans NC_000017.10 - 48149386 Apr 27, 2020 (154)
107 Genetic variation in the Estonian population NC_000017.10 - 48149386 Oct 12, 2018 (152)
108 ExAC NC_000017.10 - 48149386 Oct 12, 2018 (152)
109 FINRISK NC_000017.10 - 48149386 Apr 27, 2020 (154)
110 The Danish reference pan genome NC_000017.10 - 48149386 Apr 27, 2020 (154)
111 gnomAD - Genomes NC_000017.11 - 50072022 Apr 26, 2021 (155)
112 gnomAD - Exomes NC_000017.10 - 48149386 Jul 13, 2019 (153)
113 GO Exome Sequencing Project NC_000017.10 - 48149386 Oct 12, 2018 (152)
114 Genome of the Netherlands Release 5 NC_000017.10 - 48149386 Apr 27, 2020 (154)
115 HapMap NC_000017.11 - 50072022 Apr 27, 2020 (154)
116 KOREAN population from KRGDB NC_000017.10 - 48149386 Apr 27, 2020 (154)
117 Medical Genome Project healthy controls from Spanish population NC_000017.10 - 48149386 Apr 27, 2020 (154)
118 Northern Sweden NC_000017.10 - 48149386 Jul 13, 2019 (153)
119 Qatari NC_000017.10 - 48149386 Apr 27, 2020 (154)
120 SGDP_PRJ NC_000017.10 - 48149386 Apr 27, 2020 (154)
121 Siberian NC_000017.10 - 48149386 Apr 27, 2020 (154)
122 8.3KJPN NC_000017.10 - 48149386 Apr 26, 2021 (155)
123 TopMed NC_000017.11 - 50072022 Apr 26, 2021 (155)
124 UK 10K study - Twins NC_000017.10 - 48149386 Oct 12, 2018 (152)
125 A Vietnamese Genetic Variation Database NC_000017.10 - 48149386 Jul 13, 2019 (153)
126 ALFA NC_000017.11 - 50072022 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs57926306 Feb 26, 2009 (130)
rs117147608 Aug 16, 2010 (132)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss113592788, ss169745271, ss202576236, ss207989470, ss282781862, ss480494165, ss491739163, ss1697200053, ss1713585715, ss3643142855 NC_000017.9:45504384:C:T NC_000017.11:50072021:C:T (self)
72094580, 39951008, 182076, 28233049, 3299112, 103613, 4378300, 12135019, 1585365, 17805564, 42746555, 580892, 15353507, 18660925, 37870985, 10077868, 80636232, 39951008, 8837329, ss227567325, ss237260555, ss243553001, ss342458048, ss480508501, ss481312359, ss485044592, ss491126594, ss537065353, ss565299226, ss661107301, ss778488593, ss782968519, ss783930254, ss832224810, ss833944560, ss974499378, ss993156635, ss1067572748, ss1081089527, ss1358845313, ss1428045713, ss1578176783, ss1584107152, ss1635743732, ss1678737765, ss1692850295, ss1711465132, ss1752229131, ss1808803315, ss1936619003, ss2029085312, ss2157561514, ss2382367914, ss2629038241, ss2633402235, ss2702121442, ss2742831113, ss2749808752, ss2950457790, ss2985733570, ss3015621312, ss3351765516, ss3627680900, ss3631382947, ss3633142958, ss3633850611, ss3634678113, ss3635538324, ss3636367561, ss3637289879, ss3638164647, ss3640385423, ss3646513448, ss3682494801, ss3742068642, ss3744978392, ss3754724881, ss3772476219, ss3825128290, ss3825902252, ss3834892754, ss3885854005, ss3935569161, ss3984118396, ss3986075091, ss3986732201, ss4017769501, ss5222666925 NC_000017.10:48149385:C:T NC_000017.11:50072021:C:T (self)
508732871, 1495703, 158005158, 253237175, 6147243474, ss2217212444, ss3028364426, ss3264180285, ss3700566390, ss3819991620, ss5037691513, ss5236944305 NC_000017.11:50072021:C:T NC_000017.11:50072021:C:T (self)
ss16188630, ss20042803 NT_010783.14:6802663:C:T NC_000017.11:50072021:C:T (self)
ss3203983, ss23638594, ss65733525, ss66531752, ss74882533, ss76354200, ss76878316, ss81744521, ss86239300, ss95210828, ss103348545, ss159735790, ss160524517, ss173228976, ss173363013 NT_010783.15:13423537:C:T NC_000017.11:50072021:C:T (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

3 citations for rs2269772
PMID Title Author Year Journal
20926544 Allele polymorphisms of tumor integrins correlate with peritoneal carcinosis capability of gastric cancer cells in radically resected patients. Scartozzi M et al. 2011 Annals of oncology
22808003 Role of vascular endothelial growth factor (VEGF) and VEGF-R genotyping in guiding the metastatic process in pT4a resected gastric cancer patients. Scartozzi M et al. 2012 PloS one
27597973 Predictive Significance of Serum Level of Vascular Endothelial Growth Factor in Gastric Cancer Patients. Wang L et al. 2016 BioMed research international
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post596+ae089ad