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dbSNP Short Genetic Variations

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1799883

Current Build 153

Released July 9, 2019

Organism
Homo sapiens
Position
chr4:119320747 (GRCh38.p12) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
T>A / T>C / T>G
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.27420 (66594/242864, GnomAD_exome)
T=0.25847 (32455/125568, TOPMED)
T=0.27394 (33209/121226, ExAC) (+ 8 more)
T=0.2460 (19358/78696, PAGE_STUDY)
T=0.2636 (8255/31318, GnomAD)
T=0.253 (1269/5008, 1000G)
T=0.300 (1346/4480, Estonian)
T=0.253 (976/3854, ALSPAC)
T=0.275 (1020/3708, TWINSUK)
T=0.22 (138/616, Vietnamese)
T=0.29 (172/600, NorthernSweden)
Clinical Significance
Reported in ClinVar
Gene : Consequence
FABP2 : Missense Variant
Publications
40 citations
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p12 chr 4 NC_000004.12:g.119320747T>A
GRCh38.p12 chr 4 NC_000004.12:g.119320747T>C
GRCh38.p12 chr 4 NC_000004.12:g.119320747T>G
GRCh37.p13 chr 4 NC_000004.11:g.120241902T>A
GRCh37.p13 chr 4 NC_000004.11:g.120241902T>C
GRCh37.p13 chr 4 NC_000004.11:g.120241902T>G
FABP2 RefSeqGene NG_011444.1:g.6415A>T
FABP2 RefSeqGene NG_011444.1:g.6415A>G
FABP2 RefSeqGene NG_011444.1:g.6415A>C
Gene: FABP2, fatty acid binding protein 2 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
FABP2 transcript NM_000134.4:c.163A>T T [ACT] > S [TCT] Coding Sequence Variant
fatty acid-binding protein, intestinal NP_000125.2:p.Thr55Ser T (Thr) > S (Ser) Missense Variant
FABP2 transcript NM_000134.4:c.163A>G T [ACT] > A [GCT] Coding Sequence Variant
fatty acid-binding protein, intestinal NP_000125.2:p.Thr55Ala T (Thr) > A (Ala) Missense Variant
FABP2 transcript NM_000134.4:c.163A>C T [ACT] > P [CCT] Coding Sequence Variant
fatty acid-binding protein, intestinal NP_000125.2:p.Thr55Pro T (Thr) > P (Pro) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: C (allele ID: 31533 )
ClinVar Accession Disease Names Clinical Significance
RCV000017958.2 FATTY ACID-BINDING PROTEIN, INTESTINAL, POLYMORPHISM OF Benign
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD - Exomes Global Study-wide 242864 T=0.27420 C=0.72580
gnomAD - Exomes European Sub 132384 T=0.27243 C=0.72757
gnomAD - Exomes Asian Sub 46868 T=0.3019 C=0.6981
gnomAD - Exomes American Sub 32174 T=0.2666 C=0.7334
gnomAD - Exomes African Sub 15652 T=0.2304 C=0.7696
gnomAD - Exomes Ashkenazi Jewish Sub 9930 T=0.256 C=0.744
gnomAD - Exomes Other Sub 5856 T=0.282 C=0.718
TopMed Global Study-wide 125568 T=0.25847 C=0.74153
ExAC Global Study-wide 121226 T=0.27394 C=0.72606
ExAC Europe Sub 73264 T=0.2746 C=0.7254
ExAC Asian Sub 25154 T=0.3012 C=0.6988
ExAC American Sub 11508 T=0.2501 C=0.7499
ExAC African Sub 10392 T=0.2303 C=0.7697
ExAC Other Sub 908 T=0.27 C=0.73
The PAGE Study Global Study-wide 78696 T=0.2460 C=0.7540
The PAGE Study AfricanAmerican Sub 32516 T=0.2304 C=0.7696
The PAGE Study Mexican Sub 10808 T=0.2558 C=0.7442
The PAGE Study Asian Sub 8314 T=0.323 C=0.677
The PAGE Study PuertoRican Sub 7918 T=0.229 C=0.771
The PAGE Study NativeHawaiian Sub 4534 T=0.181 C=0.819
The PAGE Study Cuban Sub 4230 T=0.254 C=0.746
The PAGE Study Dominican Sub 3828 T=0.246 C=0.754
The PAGE Study CentralAmerican Sub 2450 T=0.258 C=0.742
The PAGE Study SouthAmerican Sub 1982 T=0.269 C=0.731
The PAGE Study NativeAmerican Sub 1260 T=0.259 C=0.741
The PAGE Study SouthAsian Sub 856 T=0.31 C=0.69
gnomAD - Genomes Global Study-wide 31318 T=0.2636 C=0.7364
gnomAD - Genomes European Sub 18858 T=0.2747 C=0.7253
gnomAD - Genomes African Sub 8694 T=0.234 C=0.766
gnomAD - Genomes East Asian Sub 1546 T=0.273 C=0.727
gnomAD - Genomes Other Sub 1084 T=0.281 C=0.719
gnomAD - Genomes American Sub 846 T=0.27 C=0.73
gnomAD - Genomes Ashkenazi Jewish Sub 290 T=0.29 C=0.71
1000Genomes Global Study-wide 5008 T=0.253 C=0.747
1000Genomes African Sub 1322 T=0.217 C=0.783
1000Genomes East Asian Sub 1008 T=0.246 C=0.754
1000Genomes Europe Sub 1006 T=0.268 C=0.732
1000Genomes South Asian Sub 978 T=0.31 C=0.69
1000Genomes American Sub 694 T=0.23 C=0.77
Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.300 C=0.700
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.253 C=0.747
UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.275 C=0.725
A Vietnamese Genetic Variation Database Global Study-wide 616 T=0.22 C=0.78
Northern Sweden ACPOP Study-wide 600 T=0.29 C=0.71
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement T= A C G Note
GRCh38.p12 chr 4 NC_000004.12:...

NC_000004.12:g.119320747=

NC_000004.12:...

NC_000004.12:g.119320747T>A

NC_000004.12:...

NC_000004.12:g.119320747T>C

NC_000004.12:...

NC_000004.12:g.119320747T>G

GRCh37.p13 chr 4 NC_000004.11:...

NC_000004.11:g.120241902=

NC_000004.11:...

NC_000004.11:g.120241902T>A

NC_000004.11:...

NC_000004.11:g.120241902T>C

NC_000004.11:...

NC_000004.11:g.120241902T>G

FABP2 RefSeqGene NG_011444.1:g...

NG_011444.1:g.6415=

NG_011444.1:g...

NG_011444.1:g.6415A>T

NG_011444.1:g...

NG_011444.1:g.6415A>G

NG_011444.1:g...

NG_011444.1:g.6415A>C

FABP2 transcript NM_000134.4:c...

NM_000134.4:c.163=

NM_000134.4:c...

NM_000134.4:c.163A>T

NM_000134.4:c...

NM_000134.4:c.163A>G

NM_000134.4:c...

NM_000134.4:c.163A>C

FABP2 transcript NM_000134.3:c...

NM_000134.3:c.163=

NM_000134.3:c...

NM_000134.3:c.163A>T

NM_000134.3:c...

NM_000134.3:c.163A>G

NM_000134.3:c...

NM_000134.3:c.163A>C

fatty acid-binding protein, intestinal NP_000125.2:p...

NP_000125.2:p.Thr55=

NP_000125.2:p...

NP_000125.2:p.Thr55Ser

NP_000125.2:p...

NP_000125.2:p.Thr55Ala

NP_000125.2:p...

NP_000125.2:p.Thr55Pro

Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

133 SubSNP, 11 Frequency, 1 ClinVar submissions
No Submitter Submission ID Date (Build)
1 HGBASE ss2419923 Nov 14, 2000 (89)
2 WI_SSAHASNP ss6675543 Feb 20, 2003 (111)
3 BCM_SSAHASNP ss10172087 Jul 11, 2003 (116)
4 WI_SSAHASNP ss11149449 Jul 11, 2003 (116)
5 BCM_SSAHASNP ss13578041 Dec 05, 2003 (119)
6 WI_SSAHASNP ss13628598 Dec 05, 2003 (119)
7 CSHL-HAPMAP ss17805120 Feb 27, 2004 (120)
8 SSAHASNP ss22076929 Apr 05, 2004 (121)
9 IMCJ-GDT ss22887143 Apr 05, 2004 (121)
10 PERLEGEN ss24180431 Sep 20, 2004 (123)
11 SSAHASNP ss35091003 May 24, 2005 (125)
12 ABI ss44570594 Mar 13, 2006 (126)
13 APPLERA_GI ss48429582 Mar 13, 2006 (126)
14 PERLEGEN ss68909484 May 16, 2007 (127)
15 AFFY ss74820580 Aug 16, 2007 (128)
16 ILLUMINA ss74866208 Dec 07, 2007 (129)
17 HGSV ss77215890 Dec 07, 2007 (129)
18 HGSV ss78653710 Dec 07, 2007 (129)
19 BCMHGSC_JDW ss92748784 Mar 24, 2008 (129)
20 HUMANGENOME_JCVI ss98857001 Feb 05, 2009 (130)
21 BGI ss104110846 Dec 01, 2009 (131)
22 1000GENOMES ss108276297 Jan 23, 2009 (130)
23 1000GENOMES ss110488766 Jan 24, 2009 (130)
24 ILLUMINA-UK ss117162041 Feb 14, 2009 (130)
25 KRIBB_YJKIM ss119403873 Dec 01, 2009 (131)
26 ILLUMINA ss120037315 Dec 01, 2009 (131)
27 ENSEMBL ss135164858 Dec 01, 2009 (131)
28 ENSEMBL ss139847306 Dec 01, 2009 (131)
29 SEATTLESEQ ss159708340 Dec 01, 2009 (131)
30 ILLUMINA ss160462698 Dec 01, 2009 (131)
31 COMPLETE_GENOMICS ss164192772 Jul 04, 2010 (132)
32 COMPLETE_GENOMICS ss167086097 Jul 04, 2010 (132)
33 ILLUMINA ss172924207 Jul 04, 2010 (132)
34 BUSHMAN ss199088742 Jul 04, 2010 (132)
35 BCM-HGSC-SUB ss206272925 Jul 04, 2010 (132)
36 1000GENOMES ss221173401 Jul 14, 2010 (132)
37 1000GENOMES ss232568398 Jul 14, 2010 (132)
38 1000GENOMES ss239821325 Jul 15, 2010 (132)
39 ILLUMINA ss244284952 Jul 04, 2010 (132)
40 OMIM-CURATED-RECORDS ss275514547 Nov 22, 2010 (133)
41 GMI ss277898596 May 04, 2012 (137)
42 GMI ss284992631 Apr 25, 2013 (138)
43 PJP ss293173456 May 09, 2011 (134)
44 NHLBI-ESP ss342170535 May 09, 2011 (134)
45 ILLUMINA ss410916036 Sep 17, 2011 (135)
46 ILLUMINA ss480311168 May 04, 2012 (137)
47 ILLUMINA ss481066587 Sep 08, 2015 (146)
48 1000GENOMES ss490893804 May 04, 2012 (137)
49 EXOME_CHIP ss491360117 May 04, 2012 (137)
50 CLINSEQ_SNP ss491859241 May 04, 2012 (137)
51 ILLUMINA ss535449684 Sep 08, 2015 (146)
52 TISHKOFF ss557806969 Apr 25, 2013 (138)
53 SSMP ss651614750 Apr 25, 2013 (138)
54 ILLUMINA ss780832082 Aug 21, 2014 (142)
55 ILLUMINA ss783515057 Aug 21, 2014 (142)
56 ILLUMINA ss832175355 Sep 08, 2015 (146)
57 JMKIDD_LAB ss974453825 Aug 21, 2014 (142)
58 EVA-GONL ss980597678 Aug 21, 2014 (142)
59 JMKIDD_LAB ss1067463925 Aug 21, 2014 (142)
60 JMKIDD_LAB ss1071897167 Aug 21, 2014 (142)
61 1000GENOMES ss1311525275 Aug 21, 2014 (142)
62 DDI ss1430026389 Apr 01, 2015 (144)
63 EVA_GENOME_DK ss1580744449 Apr 01, 2015 (144)
64 EVA_FINRISK ss1584036031 Apr 01, 2015 (144)
65 EVA_DECODE ss1590105213 Apr 01, 2015 (144)
66 EVA_UK10K_ALSPAC ss1611025300 Apr 01, 2015 (144)
67 EVA_UK10K_TWINSUK ss1654019333 Apr 01, 2015 (144)
68 EVA_EXAC ss1687620643 Apr 01, 2015 (144)
69 EVA_MGP ss1711070268 Apr 01, 2015 (144)
70 EVA_SVP ss1712702227 Apr 01, 2015 (144)
71 ILLUMINA ss1752494874 Sep 08, 2015 (146)
72 ILLUMINA ss1752494875 Sep 08, 2015 (146)
73 HAMMER_LAB ss1802096509 Sep 08, 2015 (146)
74 ILLUMINA ss1917784210 Feb 12, 2016 (147)
75 WEILL_CORNELL_DGM ss1923839608 Feb 12, 2016 (147)
76 ILLUMINA ss1946125988 Feb 12, 2016 (147)
77 ILLUMINA ss1946125989 Feb 12, 2016 (147)
78 ILLUMINA ss1958716143 Feb 12, 2016 (147)
79 ILLUMINA ss1958716144 Feb 12, 2016 (147)
80 GENOMED ss1969850271 Jul 19, 2016 (147)
81 JJLAB ss2022503006 Sep 14, 2016 (149)
82 USC_VALOUEV ss2150633848 Dec 20, 2016 (150)
83 HUMAN_LONGEVITY ss2266556612 Dec 20, 2016 (150)
84 TOPMED ss2434416396 Dec 20, 2016 (150)
85 SYSTEMSBIOZJU ss2625748247 Nov 08, 2017 (151)
86 ILLUMINA ss2634169832 Nov 08, 2017 (151)
87 GRF ss2706116266 Nov 08, 2017 (151)
88 ILLUMINA ss2710662962 Nov 08, 2017 (151)
89 GNOMAD ss2734707977 Nov 08, 2017 (151)
90 GNOMAD ss2747295621 Nov 08, 2017 (151)
91 GNOMAD ss2814430911 Nov 08, 2017 (151)
92 AFFY ss2985302181 Nov 08, 2017 (151)
93 SWEGEN ss2995435320 Nov 08, 2017 (151)
94 ILLUMINA ss3022409854 Nov 08, 2017 (151)
95 BIOINF_KMB_FNS_UNIBA ss3025028202 Nov 08, 2017 (151)
96 CSHL ss3345925699 Nov 08, 2017 (151)
97 TOPMED ss3440869892 Nov 08, 2017 (151)
98 TOPMED ss3440869893 Nov 08, 2017 (151)
99 ILLUMINA ss3625852945 Oct 12, 2018 (152)
100 ILLUMINA ss3629052466 Oct 12, 2018 (152)
101 ILLUMINA ss3633347130 Oct 12, 2018 (152)
102 ILLUMINA ss3634066574 Oct 12, 2018 (152)
103 ILLUMINA ss3634968408 Oct 12, 2018 (152)
104 ILLUMINA ss3634968409 Oct 12, 2018 (152)
105 ILLUMINA ss3635749220 Oct 12, 2018 (152)
106 ILLUMINA ss3636673508 Oct 12, 2018 (152)
107 ILLUMINA ss3637501761 Oct 12, 2018 (152)
108 ILLUMINA ss3638508578 Oct 12, 2018 (152)
109 ILLUMINA ss3640675701 Oct 12, 2018 (152)
110 ILLUMINA ss3640675702 Oct 12, 2018 (152)
111 ILLUMINA ss3643458285 Oct 12, 2018 (152)
112 ILLUMINA ss3644858819 Oct 12, 2018 (152)
113 ILLUMINA ss3644858820 Oct 12, 2018 (152)
114 OMUKHERJEE_ADBS ss3646312009 Oct 12, 2018 (152)
115 URBANLAB ss3647831263 Oct 12, 2018 (152)
116 ILLUMINA ss3652897768 Oct 12, 2018 (152)
117 ILLUMINA ss3654073934 Oct 12, 2018 (152)
118 EGCUT_WGS ss3663337604 Jul 13, 2019 (153)
119 EVA_DECODE ss3712922994 Jul 13, 2019 (153)
120 ILLUMINA ss3726165993 Jul 13, 2019 (153)
121 ACPOP ss3731543284 Jul 13, 2019 (153)
122 ILLUMINA ss3744240501 Jul 13, 2019 (153)
123 ILLUMINA ss3744529243 Jul 13, 2019 (153)
124 ILLUMINA ss3745268655 Jul 13, 2019 (153)
125 ILLUMINA ss3745268656 Jul 13, 2019 (153)
126 EVA ss3762324586 Jul 13, 2019 (153)
127 PAGE_CC ss3771150278 Jul 13, 2019 (153)
128 ILLUMINA ss3772763151 Jul 13, 2019 (153)
129 ILLUMINA ss3772763152 Jul 13, 2019 (153)
130 PACBIO ss3784839324 Jul 13, 2019 (153)
131 PACBIO ss3790278290 Jul 13, 2019 (153)
132 PACBIO ss3795153722 Jul 13, 2019 (153)
133 KHV_HUMAN_GENOMES ss3805478738 Jul 13, 2019 (153)
134 1000Genomes NC_000004.11 - 120241902 Oct 12, 2018 (152)
135 The Avon Longitudinal Study of Parents and Children NC_000004.11 - 120241902 Oct 12, 2018 (152)
136 Genetic variation in the Estonian population NC_000004.11 - 120241902 Oct 12, 2018 (152)
137 ExAC NC_000004.11 - 120241902 Oct 12, 2018 (152)
138 gnomAD - Genomes NC_000004.11 - 120241902 Jul 13, 2019 (153)
139 gnomAD - Exomes NC_000004.11 - 120241902 Jul 13, 2019 (153)
140 Northern Sweden NC_000004.11 - 120241902 Jul 13, 2019 (153)
141 The PAGE Study NC_000004.12 - 119320747 Jul 13, 2019 (153)
142 TopMed NC_000004.12 - 119320747 Oct 12, 2018 (152)
143 UK 10K study - Twins NC_000004.11 - 120241902 Oct 12, 2018 (152)
144 A Vietnamese Genetic Variation Database NC_000004.11 - 120241902 Jul 13, 2019 (153)
145 ClinVar RCV000017958.2 Oct 12, 2018 (152)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs17694079 Oct 07, 2004 (123)
rs52836284 Sep 21, 2007 (128)
rs117220903 Aug 16, 2010 (132)
Added to this RefSNP Cluster:
Submission ids Observation SPDI Canonical SPDI Source RSIDs
ss3440869892 NC_000004.12:119320746:T:A NC_000004.12:119320746:T:A (self)
ss2419923, ss119403873 NT_016354.19:44789622:T:A NC_000004.12:119320746:T:A (self)
ss35091003, ss77215890, ss78653710 NC_000004.9:120599504:T:C NC_000004.12:119320746:T:C (self)
ss92748784, ss108276297, ss110488766, ss117162041, ss164192772, ss167086097, ss199088742, ss206272925, ss277898596, ss284992631, ss293173456, ss491859241, ss1590105213, ss1712702227, ss2710662962, ss3643458285 NC_000004.10:120461349:T:C NC_000004.12:119320746:T:C (self)
22989031, 12789940, 9075852, 7596125, 62833634, 3817647, 4828149, 12789940, 2812857, ss221173401, ss232568398, ss239821325, ss342170535, ss480311168, ss481066587, ss490893804, ss491360117, ss535449684, ss557806969, ss651614750, ss780832082, ss783515057, ss832175355, ss974453825, ss980597678, ss1067463925, ss1071897167, ss1311525275, ss1430026389, ss1580744449, ss1584036031, ss1611025300, ss1654019333, ss1687620643, ss1711070268, ss1752494874, ss1752494875, ss1802096509, ss1917784210, ss1923839608, ss1946125988, ss1946125989, ss1958716143, ss1958716144, ss1969850271, ss2022503006, ss2150633848, ss2434416396, ss2625748247, ss2634169832, ss2706116266, ss2734707977, ss2747295621, ss2814430911, ss2985302181, ss2995435320, ss3022409854, ss3345925699, ss3625852945, ss3629052466, ss3633347130, ss3634066574, ss3634968408, ss3634968409, ss3635749220, ss3636673508, ss3637501761, ss3638508578, ss3640675701, ss3640675702, ss3644858819, ss3644858820, ss3646312009, ss3652897768, ss3654073934, ss3663337604, ss3731543284, ss3744240501, ss3744529243, ss3745268655, ss3745268656, ss3762324586, ss3772763151, ss3772763152, ss3784839324, ss3790278290, ss3795153722 NC_000004.11:120241901:T:C NC_000004.12:119320746:T:C (self)
RCV000017958.2, 371747, 291839630, ss275514547, ss2266556612, ss3025028202, ss3440869893, ss3647831263, ss3712922994, ss3726165993, ss3771150278, ss3805478738 NC_000004.12:119320746:T:C NC_000004.12:119320746:T:C (self)
ss10172087, ss11149449 NT_016354.15:44737030:T:C NC_000004.12:119320746:T:C (self)
ss13578041, ss13628598, ss17805120, ss22076929 NT_016354.16:44737030:T:C NC_000004.12:119320746:T:C (self)
ss2419923, ss6675543, ss22887143, ss24180431, ss44570594, ss48429582, ss68909484, ss74820580, ss74866208, ss98857001, ss104110846, ss119403873, ss120037315, ss135164858, ss139847306, ss159708340, ss160462698, ss172924207, ss244284952, ss410916036 NT_016354.19:44789622:T:C NC_000004.12:119320746:T:C (self)
ss2419923, ss119403873 NT_016354.19:44789622:T:G NC_000004.12:119320746:T:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

40 citations for rs1799883
PMID Title Author Year Journal
7883976 An amino acid substitution in the human intestinal fatty acid binding protein is associated with increased fatty acid binding, increased fat oxidation, and insulin resistance. Baier LJ et al. 1995 The Journal of clinical investigation
9253345 Variants in the human intestinal fatty acid binding protein 2 gene in obese subjects. Sipiläinen R et al. 1997 The Journal of clinical endocrinology and metabolism
10946885 The T 54 allele of the intestinal fatty acid-binding protein 2 is associated with a parental history of stroke. Carlsson M et al. 2000 The Journal of clinical endocrinology and metabolism
10999802 Codon-54 polymorphism of the fatty acid-binding protein 2 gene is associated with elevation of fasting and postprandial triglyceride in type 2 diabetes. Georgopoulos A et al. 2000 The Journal of clinical endocrinology and metabolism
12161503 Unlike type 2 diabetes, type 1 does not interact with the codon 54 polymorphism of the fatty acid binding protein 2 gene. Georgopoulos A et al. 2002 The Journal of clinical endocrinology and metabolism
14666368 Variation in the FABP2 promoter affects gene expression: implications for prior association studies. Formanack ML et al. 2004 Diabetologia
15572430 Association of the intestinal fatty acid-binding protein Ala54Thr polymorphism and abdominal adipose tissue in African-American and Caucasian women. Lara-Castro C et al. 2005 The Journal of clinical endocrinology and metabolism
16175505 Identification of four gene variants associated with myocardial infarction. Shiffman D et al. 2005 American journal of human genetics
17975119 Association of gene variants with incident myocardial infarction in the Cardiovascular Health Study. Shiffman D et al. 2008 Arteriosclerosis, thrombosis, and vascular biology
18282109 Adaptations to climate in candidate genes for common metabolic disorders. Hancock AM et al. 2008 PLoS genetics
18506375 Association of genetic variants with atherothrombotic cerebral infarction in Japanese individuals with metabolic syndrome. Yamada Y et al. 2008 International journal of molecular medicine
19288030 Association of genetic variants with chronic kidney disease in Japanese individuals with type 2 diabetes mellitus. Yoshida T et al. 2009 International journal of molecular medicine
19379518 Development of a fingerprinting panel using medically relevant polymorphisms. Cross DS et al. 2009 BMC medical genomics
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Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post104+4a6ee9c