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dbSNP Short Genetic Variations

Reference SNP (rs) Report

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This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs121434217

Current Build 151

Released July 17, 2018

Organism
Homo sapiens
Position
chr11:108299752 (GRCh38.p7) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>C
Variation Type
SNV Single Nucleotide Variation
Frequency
None
Clinical Significance
Reported in ClinVar
Gene : Consequence
ATM : Missense Variant
Publications
1 citation
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p7 chr 11 NC_000011.10:g.108299752G>C
GRCh37.p13 chr 11 NC_000011.9:g.108170479G>C
ATM RefSeqGene (LRG_135) NG_009830.1:g.81921G>C
Gene: ATM, ATM serine/threonine kinase (plus strand)
Molecule type Change Amino acid[Codon] SO Term
ATM transcript variant 2 NM_000051.3:c.504...

NM_000051.3:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform a NP_000042.3:p.Asp...

NP_000042.3:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X13 XM_006718845.1:c....

XM_006718845.1:c.1000G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X8 XP_006718908.1:p....

XP_006718908.1:p.Asp334His

D (Asp) > H (His) Missense Variant
ATM transcript variant X10 XM_011542845.1:c....

XM_011542845.1:c.3736G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X5 XP_011541147.1:p....

XP_011541147.1:p.Asp1246His

D (Asp) > H (His) Missense Variant
ATM transcript variant X1 XM_005271561.4:c....

XM_005271561.4:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X1 XP_005271618.2:p....

XP_005271618.2:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X2 XM_011542840.2:c....

XM_011542840.2:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X1 XP_011541142.1:p....

XP_011541142.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X3 XM_006718843.3:c....

XM_006718843.3:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X1 XP_006718906.1:p....

XP_006718906.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X4 XM_017017789.1:c....

XM_017017789.1:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X1 XP_016873278.1:p....

XP_016873278.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X5 XM_005271562.4:c....

XM_005271562.4:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X1 XP_005271619.2:p....

XP_005271619.2:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X6 XM_017017790.1:c....

XM_017017790.1:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X1 XP_016873279.1:p....

XP_016873279.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X7 XM_011542842.2:c....

XM_011542842.2:c.4879G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X2 XP_011541144.1:p....

XP_011541144.1:p.Asp1627His

D (Asp) > H (His) Missense Variant
ATM transcript variant X7 XM_011542843.2:c....

XM_011542843.2:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X3 XP_011541145.1:p....

XP_011541145.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X9 XM_011542844.2:c....

XM_011542844.2:c.4000G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X4 XP_011541146.1:p....

XP_011541146.1:p.Asp1334His

D (Asp) > H (His) Missense Variant
ATM transcript variant X10 XM_017017791.1:c....

XM_017017791.1:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X6 XP_016873280.1:p....

XP_016873280.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
ATM transcript variant X12 XM_017017792.1:c....

XM_017017792.1:c.5044G>C

D [GAT] > H [CAT] Coding Sequence Variant
serine-protein kinase ATM isoform X7 XP_016873281.1:p....

XP_016873281.1:p.Asp1682His

D (Asp) > H (His) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: C (allele ID: 18065 )
ClinVar Accession Disease Names Clinical Significance
RCV000003165.5 T-cell prolymphocytic leukemia Pathogenic
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

None
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= C Note
GRCh38.p7 chr 11 NC_000011.10:g.108299752G= NC_000011.10:g.10829975...

NC_000011.10:g.108299752G>C

GRCh37.p13 chr 11 NC_000011.9:g.108170479G= NC_000011.9:g.108170479G>C
ATM RefSeqGene (LRG_135) NG_009830.1:g.81921G= NG_009830.1:g.81921G>C
ATM transcript variant 2 NM_000051.3:c.5044G= NM_000051.3:c.5044G>C
ATM transcript variant X5 XM_005271562.4:c.5044G= XM_005271562.4:c.5044G>C
ATM transcript variant X2 XM_005271562.1:c.5044G= XM_005271562.1:c.5044G>C
ATM transcript variant X1 XM_005271561.4:c.5044G= XM_005271561.4:c.5044G>C
ATM transcript variant X3 XM_006718843.3:c.5044G= XM_006718843.3:c.5044G>C
ATM transcript variant X9 XM_011542844.2:c.4000G= XM_011542844.2:c.4000G>C
ATM transcript variant X2 XM_011542840.2:c.5044G= XM_011542840.2:c.5044G>C
ATM transcript variant X7 XM_011542842.2:c.4879G= XM_011542842.2:c.4879G>C
ATM transcript variant X7 XM_011542843.2:c.5044G= XM_011542843.2:c.5044G>C
ATM transcript variant X4 XM_017017789.1:c.5044G= XM_017017789.1:c.5044G>C
ATM transcript variant X6 XM_017017790.1:c.5044G= XM_017017790.1:c.5044G>C
ATM transcript variant X10 XM_011542845.1:c.3736G= XM_011542845.1:c.3736G>C
ATM transcript variant X13 XM_006718845.1:c.1000G= XM_006718845.1:c.1000G>C
ATM transcript variant X10 XM_017017791.1:c.5044G= XM_017017791.1:c.5044G>C
ATM transcript variant X12 XM_017017792.1:c.5044G= XM_017017792.1:c.5044G>C
serine-protein kinase ATM isoform a NP_000042.3:p.Asp1682= NP_000042.3:p.Asp1682His
serine-protein kinase ATM isoform X1 XP_005271619.2:p.Asp1682= XP_005271619.2:p.Asp168...

XP_005271619.2:p.Asp1682His

serine-protein kinase ATM isoform X1 XP_005271618.2:p.Asp1682= XP_005271618.2:p.Asp168...

XP_005271618.2:p.Asp1682His

serine-protein kinase ATM isoform X1 XP_006718906.1:p.Asp1682= XP_006718906.1:p.Asp168...

XP_006718906.1:p.Asp1682His

serine-protein kinase ATM isoform X4 XP_011541146.1:p.Asp1334= XP_011541146.1:p.Asp133...

XP_011541146.1:p.Asp1334His

serine-protein kinase ATM isoform X1 XP_011541142.1:p.Asp1682= XP_011541142.1:p.Asp168...

XP_011541142.1:p.Asp1682His

serine-protein kinase ATM isoform X2 XP_011541144.1:p.Asp1627= XP_011541144.1:p.Asp162...

XP_011541144.1:p.Asp1627His

serine-protein kinase ATM isoform X3 XP_011541145.1:p.Asp1682= XP_011541145.1:p.Asp168...

XP_011541145.1:p.Asp1682His

serine-protein kinase ATM isoform X1 XP_016873278.1:p.Asp1682= XP_016873278.1:p.Asp168...

XP_016873278.1:p.Asp1682His

serine-protein kinase ATM isoform X1 XP_016873279.1:p.Asp1682= XP_016873279.1:p.Asp168...

XP_016873279.1:p.Asp1682His

serine-protein kinase ATM isoform X5 XP_011541147.1:p.Asp1246= XP_011541147.1:p.Asp124...

XP_011541147.1:p.Asp1246His

serine-protein kinase ATM isoform X8 XP_006718908.1:p.Asp334= XP_006718908.1:p.Asp334His
serine-protein kinase ATM isoform X6 XP_016873280.1:p.Asp1682= XP_016873280.1:p.Asp168...

XP_016873280.1:p.Asp1682His

serine-protein kinase ATM isoform X7 XP_016873281.1:p.Asp1682= XP_016873281.1:p.Asp168...

XP_016873281.1:p.Asp1682His

Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

1 SubSNP, 1 ClinVar submissions
No Submitter Submission ID Date (Build)
1 OMIM-CURATED-RECORDS ss256240210 Aug 23, 2010 (132)
2 ClinVar RCV000003165.5 Jul 20, 2018 (151)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission ids Observation SPDI Canonical SPDI Source RSIDs
ss256240210 NC_000011.10:108299751:G= NC_000011.10:108299751:G= (self)
RCV000003165.5, ss256240210 NC_000011.10:108299751:G>C NC_000011.10:108299751:G>C (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs121434217
PMID Title Author Year Journal
9288106 Clustering of missense mutations in the ataxia-telangiectasia gene in a sporadic T-cell leukaemia. Vorechovsk√Ĺ I et al. 1997 Nature genetics

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 0.1.4.post833+d3ba21e