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  1. Galván-Peña S, Carroll RG, Newman C, Hinchy EC, Palsson-McDermott E, Robinson EK, Covarrubias S, Nadin A, James AM, Haneklaus M, Carpenter S, Kelly VP, Murphy MP, Modis LK, O'Neill LA. Malonylation of GAPDH is an inflammatory signal in macrophages. Nat Commun. 2019 Jan 18;10(1):338. doi: 10.1038/s41467-018-08187-6. PubMed PMID: 30659183; PubMed Central PMCID: PMC6338787.
  2. Elling R, Robinson EK, Shapleigh B, Liapis SC, Covarrubias S, Katzman S, Groff AF, Jiang Z, Agarwal S, Motwani M, Chan J, Sharma S, Hennessy EJ, FitzGerald GA, McManus MT, Rinn JL, Fitzgerald KA, Carpenter S. Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2. Cell Rep. 2018 Nov 6;25(6):1511-1524.e6. doi: 10.1016/j.celrep.2018.10.027. PubMed PMID: 30404006; PubMed Central PMCID: PMC6291222.
  3. Carpenter S, Fitzgerald KA. Cytokines and Long Noncoding RNAs. Cold Spring Harb Perspect Biol. 2018 Jun 1;10(6). doi: 10.1101/cshperspect.a028589. Review. PubMed PMID: 28716885.
  4. Covarrubias S, Robinson EK, Shapleigh B, Vollmers A, Katzman S, Hanley N, Fong N, McManus MT, Carpenter S. CRISPR/Cas-based screening of long non-coding RNAs (lncRNAs) in macrophages with an NF-κB reporter. J Biol Chem. 2017 Dec 22;292(51):20911-20920. doi: 10.1074/jbc.M117.799155. Epub 2017 Oct 19. PubMed PMID: 29051223; PubMed Central PMCID: PMC5743067.
  5. Ghosh S, Wallerath C, Covarrubias S, Hornung V, Carpenter S, Fitzgerald KA. The PYHIN Protein p205 Regulates the Inflammasome by Controlling Asc Expression. J Immunol. 2017 Nov 1;199(9):3249-3260. doi: 10.4049/jimmunol.1700823. Epub 2017 Sep 20. PubMed PMID: 28931603; PubMed Central PMCID: PMC5929989.
  6. Akula MK, Shi M, Jiang Z, Foster CE, Miao D, Li AS, Zhang X, Gavin RM, Forde SD, Germain G, Carpenter S, Rosadini CV, Gritsman K, Chae JJ, Hampton R, Silverman N, Gravallese EM, Kagan JC, Fitzgerald KA, Kastner DL, Golenbock DT, Bergo MO, Wang D. Control of the innate immune response by the mevalonate pathway. Nat Immunol. 2016 Aug;17(8):922-9. doi: 10.1038/ni.3487. Epub 2016 Jun 6. PubMed PMID: 27270400; PubMed Central PMCID: PMC4955724.
  7. Carpenter S. Long noncoding RNA: Novel links between gene expression and innate immunity. Virus Res. 2016 Jan 2;212:137-45. doi: 10.1016/j.virusres.2015.08.019. Epub 2015 Sep 8. Review. PubMed PMID: 26362525.
  8. Carpenter S. Determining the Function of Long Noncoding RNA in Innate Immunity. Methods Mol Biol. 2016;1390:183-95. doi: 10.1007/978-1-4939-3335-8_12. PubMed PMID: 26803630.
  9. Carpenter S. Editorial: Functions of Non-Coding RNA in Innate Immunity. Front Immunol. 2015;6:622. doi: 10.3389/fimmu.2015.00622. eCollection 2015. PubMed PMID: 26697016; PubMed Central PMCID: PMC4677271.
  10. Chan J, Atianand M, Jiang Z, Carpenter S, Aiello D, Elling R, Fitzgerald KA, Caffrey DR. Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α. J Immunol. 2015 Aug 15;195(4):1359-63. doi: 10.4049/jimmunol.1500264. Epub 2015 Jul 15. PubMed PMID: 26179904; PubMed Central PMCID: PMC4530055.
  11. Carpenter S, Fitzgerald KA. Transcription of inflammatory genes: long noncoding RNA and beyond. J Interferon Cytokine Res. 2015 Feb;35(2):79-88. doi: 10.1089/jir.2014.0120. Epub 2014 Sep 24. Review. PubMed PMID: 25250698; PubMed Central PMCID: PMC4312878.
  12. Baum R, Sharma S, Carpenter S, Li QZ, Busto P, Fitzgerald KA, Marshak-Rothstein A, Gravallese EM. Cutting edge: AIM2 and endosomal TLRs differentially regulate arthritis and autoantibody production in DNase II-deficient mice. J Immunol. 2015 Feb 1;194(3):873-7. doi: 10.4049/jimmunol.1402573. Epub 2014 Dec 29. PubMed PMID: 25548216; PubMed Central PMCID: PMC4299698.
  13. Thompson MR, Sharma S, Atianand M, Jensen SB, Carpenter S, Knipe DM, Fitzgerald KA, Kurt-Jones EA. Interferon γ-inducible protein (IFI) 16 transcriptionally regulates type i interferons and other interferon-stimulated genes and controls the interferon response to both DNA and RNA viruses. J Biol Chem. 2014 Aug 22;289(34):23568-81. doi: 10.1074/jbc.M114.554147. Epub 2014 Jul 7. PubMed PMID: 25002588; PubMed Central PMCID: PMC4156042.
  14. Wochal P, Rathinam VA, Dunne A, Carlson T, Kuang W, Seidl KJ, Hall JP, Lin LL, Collins M, Schattgen SA, MacKay CR, Fagundes CT, Carpenter S, Fitzgerald KA, O'Neill LA. TRIL is involved in cytokine production in the brain following Escherichia coli infection. J Immunol. 2014 Aug 15;193(4):1911-9. doi: 10.4049/jimmunol.1302392. Epub 2014 Jul 11. PubMed PMID: 25015823; PubMed Central PMCID: PMC5503690.
  15. Carpenter S, Ricci EP, Mercier BC, Moore MJ, Fitzgerald KA. Post-transcriptional regulation of gene expression in innate immunity. Nat Rev Immunol. 2014 Jun;14(6):361-76. doi: 10.1038/nri3682. Review. PubMed PMID: 24854588.
  16. Hangauer MJ, Carpenter S, McManus MT. Discovering the complexity of the metazoan transcriptome. Genome Biol. 2014 Apr 29;15(4):112. doi: 10.1186/gb4172. PubMed PMID: 25001157; PubMed Central PMCID: PMC4054782.
  17. Doyle SL, Shirey KA, McGettrick AF, Kenny EF, Carpenter S, Caffrey BE, Gargan S, Quinn SR, Caamaño JH, Moynagh P, Vogel SN, O'Neill LA. Nuclear factor κB2 p52 protein has a role in antiviral immunity through IκB kinase epsilon-dependent induction of Sp1 protein and interleukin 15. J Biol Chem. 2013 Aug 30;288(35):25066-75. doi: 10.1074/jbc.M113.469122. Epub 2013 Jul 19. PubMed PMID: 23873932; PubMed Central PMCID: PMC3757171.
  18. Carpenter S, Aiello D, Atianand MK, Ricci EP, Gandhi P, Hall LL, Byron M, Monks B, Henry-Bezy M, Lawrence JB, O'Neill LA, Moore MJ, Caffrey DR, Fitzgerald KA. A long noncoding RNA mediates both activation and repression of immune response genes. Science. 2013 Aug 16;341(6147):789-92. doi: 10.1126/science.1240925. Epub 2013 Aug 1. PubMed PMID: 23907535; PubMed Central PMCID: PMC4376668.
  19. Sheedy FJ, Grebe A, Rayner KJ, Kalantari P, Ramkhelawon B, Carpenter SB, Becker CE, Ediriweera HN, Mullick AE, Golenbock DT, Stuart LM, Latz E, Fitzgerald KA, Moore KJ. CD36 coordinates NLRP3 inflammasome activation by facilitating intracellular nucleation of soluble ligands into particulate ligands in sterile inflammation. Nat Immunol. 2013 Aug;14(8):812-20. doi: 10.1038/ni.2639. Epub 2013 Jun 30. PubMed PMID: 23812099; PubMed Central PMCID: PMC3720827.
  20. Scharfe-Nugent A, Corr SC, Carpenter SB, Keogh L, Doyle B, Martin C, Fitzgerald KA, Daly S, O'Leary JJ, O'Neill LA. TLR9 provokes inflammation in response to fetal DNA: mechanism for fetal loss in preterm birth and preeclampsia. J Immunol. 2012 Jun 1;188(11):5706-12. doi: 10.4049/jimmunol.1103454. Epub 2012 Apr 27. PubMed PMID: 22544937.
  21. Carpenter S, Wochal P, Dunne A, O'Neill LA. Toll-like receptor 3 (TLR3) signaling requires TLR4 Interactor with leucine-rich REPeats (TRIL). J Biol Chem. 2011 Nov 4;286(44):38795-804. doi: 10.1074/jbc.M111.255893. Epub 2011 Sep 12. PubMed PMID: 21911501; PubMed Central PMCID: PMC3207441.
  22. Dunne A, Carpenter S, Brikos C, Gray P, Strelow A, Wesche H, Morrice N, O'Neill LA. IRAK1 and IRAK4 promote phosphorylation, ubiquitination, and degradation of MyD88 adaptor-like (Mal). J Biol Chem. 2010 Jun 11;285(24):18276-82. doi: 10.1074/jbc.M109.098137. Epub 2010 Apr 16. PubMed PMID: 20400509; PubMed Central PMCID: PMC2881752.
  23. Madden SF, Carpenter SB, Jeffery IB, Björkbacka H, Fitzgerald KA, O'Neill LA, Higgins DG. Detecting microRNA activity from gene expression data. BMC Bioinformatics. 2010 May 18;11:257. doi: 10.1186/1471-2105-11-257. PubMed PMID: 20482775; PubMed Central PMCID: PMC2885376.
  24. Carpenter S, Carlson T, Dellacasagrande J, Garcia A, Gibbons S, Hertzog P, Lyons A, Lin LL, Lynch M, Monie T, Murphy C, Seidl KJ, Wells C, Dunne A, O'Neill LA. TRIL, a functional component of the TLR4 signaling complex, highly expressed in brain. J Immunol. 2009 Sep 15;183(6):3989-95. doi: 10.4049/jimmunol.0901518. Epub 2009 Aug 26. PubMed PMID: 19710467.
  25. Carpenter S, O'Neill LA. Recent insights into the structure of Toll-like receptors and post-translational modifications of their associated signalling proteins. Biochem J. 2009 Jul 29;422(1):1-10. doi: 10.1042/BJ20090616. Review. PubMed PMID: 19627256.
  26. McCoy CE, Carpenter S, Pålsson-McDermott EM, Gearing LJ, O'Neill LA. Glucocorticoids inhibit IRF3 phosphorylation in response to Toll-like receptor-3 and -4 by targeting TBK1 activation. J Biol Chem. 2008 May 23;283(21):14277-85. doi: 10.1074/jbc.M709731200. Epub 2008 Mar 20. PubMed PMID: 18356163.
  27. Carpenter S, O'Neill LA. How important are Toll-like receptors for antimicrobial responses?. Cell Microbiol. 2007 Aug;9(8):1891-901. doi: 10.1111/j.1462-5822.2007.00965.x. Epub 2007 May 23. Review. PubMed PMID: 17521328.
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