My Bibliography

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Alkhaldi HA, Vik SB. Analysis of compound heterozygous and homozygous mutations found in peripheral subunits of human respiratory Complex I, NDUFS1, NDUFS2, NDUFS8 and NDUFV1, by modeling in the E. coli enzyme. Mitochondrion. 2023 Jan;68:87-104. doi: 10.1016/j.mito.2022.11.007. Epub 2022 Nov 30. PubMed PMID: 36462614; PubMed Central PMCID: PMC9805526.

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Alkhaldi HA, Phan DH, Vik SB. Analysis of Human Clinical Mutations of Mitochondrial ND1 in a Bacterial Model System for Complex I. Life (Basel). 2022 Nov 20;12(11). doi: 10.3390/life12111934. PubMed PMID: 36431069; PubMed Central PMCID: PMC9696053.

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Alkhaldi HA, Vik SB. Subunits E-F-G of E. coli Complex I can form an active complex when expressed alone, but in time-delayed assembly co-expression of B-CD-E-F-G is optimal. Biochim Biophys Acta Bioenerg. 2022 Oct 1;1863(7):148593. doi: 10.1016/j.bbabio.2022.148593. Epub 2022 Jul 16. PubMed PMID: 35850264; PubMed Central PMCID: PMC9783743.

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Zhang F, Dang QL, Vik SB. Human clinical mutations in mitochondrially encoded subunits of Complex I can be successfully modeled in E. coli. Mitochondrion. 2022 May;64:59-72. doi: 10.1016/j.mito.2022.03.001. Epub 2022 Mar 17. PubMed PMID: 35306226; PubMed Central PMCID: PMC9035099.

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Zhang F, Vik SB. Analysis of the assembly pathway for membrane subunits of Complex I reveals that subunit L (ND5) can assemble last in E. coli. BBA Adv. 2021;1. doi: 10.1016/j.bbadva.2021.100027. Epub 2021 Oct 17. PubMed PMID: 35814529; PubMed Central PMCID: PMC9268722.

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Dang QL, Phan DH, Johnson AN, Pasapuleti M, Alkhaldi HA, Zhang F, Vik SB. Analysis of Human Mutations in the Supernumerary Subunits of Complex I. Life (Basel). 2020 Nov 20;10(11). doi: 10.3390/life10110296. Review. PubMed PMID: 33233646; PubMed Central PMCID: PMC7699753.

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Galkin MA, Russell AN, Vik SB, Berry RM, Ishmukhametov RR. Detergent-free Ultrafast Reconstitution of Membrane Proteins into Lipid Bilayers Using Fusogenic Complementary-charged Proteoliposomes. J Vis Exp. 2018 Apr 5;(134). doi: 10.3791/56909. PubMed PMID: 29683454; PubMed Central PMCID: PMC5933413.

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Ishmukhametov RR, DeLeon-Rangel J, Zhu S, Vik SB. Analysis of an N-terminal deletion in subunit a of the Escherichia coli ATP synthase. J Bioenerg Biomembr. 2017 Apr;49(2):171-181. doi: 10.1007/s10863-017-9694-z. Epub 2017 Jan 11. PubMed PMID: 28078625; PubMed Central PMCID: PMC5376380.

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Tursun A, Zhu S, Vik SB. Probing the proton channels in subunit N of Complex I from Escherichia coli through intra-subunit cross-linking. Biochim Biophys Acta. 2016 Dec;1857(12):1840-1848. doi: 10.1016/j.bbabio.2016.09.005. Epub 2016 Sep 12. PubMed PMID: 27632419; PubMed Central PMCID: PMC5079763.

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Zhu S, Canales A, Bedair M, Vik SB. Loss of Complex I activity in the Escherichia coli enzyme results from truncating the C-terminus of subunit K, but not from cross-linking it to subunits N or L. J Bioenerg Biomembr. 2016 Jun;48(3):325-33. doi: 10.1007/s10863-016-9655-y. Epub 2016 Mar 1. PubMed PMID: 26931547; PubMed Central PMCID: PMC4884663.

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Zhu S, Vik SB. Constraining the Lateral Helix of Respiratory Complex I by Cross-linking Does Not Impair Enzyme Activity or Proton Translocation. J Biol Chem. 2015 Aug 21;290(34):20761-20773. doi: 10.1074/jbc.M115.660381. Epub 2015 Jul 1. PubMed PMID: 26134569; PubMed Central PMCID: PMC4543639.

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DeLeon-Rangel J, Ishmukhametov RR, Jiang W, Fillingame RH, Vik SB. Interactions between subunits a and b in the rotary ATP synthase as determined by cross-linking. FEBS Lett. 2013 Apr 2;587(7):892-7. doi: 10.1016/j.febslet.2013.02.012. Epub 2013 Feb 14. PubMed PMID: 23416299; PubMed Central PMCID: PMC3608841.

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Li B, Vik SB, Tu Y. Theaflavins inhibit the ATP synthase and the respiratory chain without increasing superoxide production. J Nutr Biochem. 2012 Aug;23(8):953-60. doi: 10.1016/j.jnutbio.2011.05.001. Epub 2011 Sep 15. PubMed PMID: 21924889; PubMed Central PMCID: PMC8717676.

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Vik SB. The transmembrane helices of the L, M, and N subunits of Complex I from E. coli can be assigned on the basis of conservation and hydrophobic moment analysis. FEBS Lett. 2011 Apr 20;585(8):1180-4. doi: 10.1016/j.febslet.2011.03.029. Epub 2011 Mar 21. PubMed PMID: 21420404.

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Michel J, DeLeon-Rangel J, Zhu S, Van Ree K, Vik SB. Mutagenesis of the L, M, and N subunits of Complex I from Escherichia coli indicates a common role in function. PLoS One. 2011 Feb 28;6(2):e17420. doi: 10.1371/journal.pone.0017420. PubMed PMID: 21387012; PubMed Central PMCID: PMC3046159.

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Amarneh B, Vik SB. Transmembrane topology of subunit N of complex I (NADH:ubiquinone oxidoreductase) from Escherichia coli. J Bioenerg Biomembr. 2010 Dec;42(6):511-6. doi: 10.1007/s10863-010-9318-3. Epub 2010 Dec 1. PubMed PMID: 21120593.

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Bae L, Vik SB. A more robust version of the Arginine 210-switched mutant in subunit a of the Escherichia coli ATP synthase. Biochim Biophys Acta. 2009 Sep;1787(9):1129-34. doi: 10.1016/j.bbabio.2009.03.022. Epub 2009 Apr 9. PubMed PMID: 19362069; PubMed Central PMCID: PMC2729658.

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Ishmukhametov RR, Pond JB, Al-Huqail A, Galkin MA, Vik SB. ATP synthesis without R210 of subunit a in the Escherichia coli ATP synthase. Biochim Biophys Acta. 2008 Jan;1777(1):32-8. doi: 10.1016/j.bbabio.2007.11.004. Epub 2007 Nov 19. PubMed PMID: 18068111; PubMed Central PMCID: PMC2258275.

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Vik SB. ATP Synthesis by Oxidative Phosphorylation. EcoSal Plus. 2007 Apr;2(2). doi: 10.1128/ecosalplus.3.2.3. PubMed PMID: 26443583.

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Ganti S, Vik SB. Chemical modification of mono-cysteine mutants allows a more global look at conformations of the epsilon subunit of the ATP synthase from Escherichia coli. J Bioenerg Biomembr. 2007 Feb;39(1):99-107. doi: 10.1007/s10863-006-9066-6. Epub 2007 Feb 23. PubMed PMID: 17318395.

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Amarneh B, De Leon-Rangel J, Vik SB. Construction of a deletion strain and expression vector for the Escherichia coli NADH:ubiquinone oxidoreductase (Complex I). Biochim Biophys Acta. 2006 Dec;1757(12):1557-60. doi: 10.1016/j.bbabio.2006.08.003. Epub 2006 Aug 10. PubMed PMID: 16979134.

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Galkin MA, Ishmukhametov RR, Vik SB. A functionally inactive, cold-stabilized form of the Escherichia coli F1Fo ATP synthase. Biochim Biophys Acta. 2006 Mar;1757(3):206-14. doi: 10.1016/j.bbabio.2006.02.011. Epub 2006 Mar 20. PubMed PMID: 16581013; PubMed Central PMCID: PMC1538965.

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Vik SB. Re: protons, proteins and ATP. Photosynth Res. 2006 Feb;87(2):231; author reply 233. doi: 10.1007/s11120-005-9015-y. Epub 2006 Mar 22. PubMed PMID: 16552480.

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Amarneh B, Vik SB. Direct transfer of NADH from malate dehydrogenase to complex I in Escherichia coli. Cell Biochem Biophys. 2005;42(3):251-61. doi: 10.1385/CBB:42:3:251. PubMed PMID: 15976458.

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Vik SB, Ishmukhametov RR. Structure and function of subunit a of the ATP synthase of Escherichia coli. J Bioenerg Biomembr. 2005 Dec;37(6):445-9. doi: 10.1007/s10863-005-9488-6. Review. PubMed PMID: 16691481.

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Ishmukhametov RR, Galkin MA, Vik SB. Ultrafast purification and reconstitution of His-tagged cysteine-less Escherichia coli F1Fo ATP synthase. Biochim Biophys Acta. 2005 Jan 7;1706(1-2):110-6. doi: 10.1016/j.bbabio.2004.09.012. PubMed PMID: 15620371.

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DeLeon-Rangel J, Zhang D, Vik SB. The role of transmembrane span 2 in the structure and function of subunit a of the ATP synthase from Escherichia coli. Arch Biochem Biophys. 2003 Oct 1;418(1):55-62. doi: 10.1016/s0003-9861(03)00391-6. PubMed PMID: 13679083.

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Amarneh B, Vik SB. Mutagenesis of subunit N of the Escherichia coli complex I. Identification of the initiation codon and the sensitivity of mutants to decylubiquinone. Biochemistry. 2003 May 6;42(17):4800-8. doi: 10.1021/bi0340346. PubMed PMID: 12718520.

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Zhang D, Vik SB. Helix packing in subunit a of the Escherichia coli ATP synthase as determined by chemical labeling and proteolysis of the cysteine-substituted protein. Biochemistry. 2003 Jan 21;42(2):331-7. doi: 10.1021/bi026649t. PubMed PMID: 12525160.

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Zhang D, Vik SB. Close proximity of a cytoplasmic loop of subunit a with c subunits of the ATP synthase from Escherichia coli. J Biol Chem. 2003 Apr 4;278(14):12319-24. doi: 10.1074/jbc.M212413200. Epub 2003 Jan 13. PubMed PMID: 12525480.

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Long JC, DeLeon-Rangel J, Vik SB. Characterization of the first cytoplasmic loop of subunit a of the Escherichia coli ATP synthase by surface labeling, cross-linking, and mutagenesis. J Biol Chem. 2002 Jul 26;277(30):27288-93. doi: 10.1074/jbc.M202118200. Epub 2002 May 20. PubMed PMID: 12021273.

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Vik SB. What is the role of epsilon in the Escherichia coli ATP synthase?. J Bioenerg Biomembr. 2000 Oct;32(5):485-91. doi: 10.1023/a:1005664908066. PubMed PMID: 15254383.

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Vik SB, Long JC, Wada T, Zhang D. A model for the structure of subunit a of the Escherichia coli ATP synthase and its role in proton translocation. Biochim Biophys Acta. 2000 May 31;1458(2-3):457-66. doi: 10.1016/s0005-2728(00)00094-3. Review. PubMed PMID: 10838058.

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Patterson AR, Wada T, Vik SB. His(15) of subunit a of the Escherichia coli ATP synthase is important for the structure or assembly of the membrane sector F(o). Arch Biochem Biophys. 1999 Aug 1;368(1):193-7. doi: 10.1006/abbi.1999.1306. PubMed PMID: 10415127.

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Wada T, Long JC, Zhang D, Vik SB. A novel labeling approach supports the five-transmembrane model of subunit a of the Escherichia coli ATP synthase. J Biol Chem. 1999 Jun 11;274(24):17353-7. doi: 10.1074/jbc.274.24.17353. PubMed PMID: 10358096.

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Xiong H, Zhang D, Vik SB. Subunit epsilon of the Escherichia coli ATP synthase: novel insights into structure and function by analysis of thirteen mutant forms. Biochemistry. 1998 Nov 17;37(46):16423-9. doi: 10.1021/bi981522i. PubMed PMID: 9819235.

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Vik SB, Patterson AR, Antonio BJ. Insertion scanning mutagenesis of subunit a of the F1F0 ATP synthase near His245 and implications on gating of the proton channel. J Biol Chem. 1998 Jun 26;273(26):16229-34. doi: 10.1074/jbc.273.26.16229. PubMed PMID: 9632681.

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Long JC, Wang S, Vik SB. Membrane topology of subunit a of the F1F0 ATP synthase as determined by labeling of unique cysteine residues. J Biol Chem. 1998 Jun 26;273(26):16235-40. doi: 10.1074/jbc.273.26.16235. PubMed PMID: 9632682.

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Xiong H, Vik SB. Alanine-scanning mutagenesis of the epsilon subunit of the F1-F0 ATP synthase from Escherichia coli reveals two classes of mutants. J Biol Chem. 1995 Oct 6;270(40):23300-4. doi: 10.1074/jbc.270.40.23300. PubMed PMID: 7559484.

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Xiong H, Vik SB. Construction and plasmid-borne complementation of strains lacking the epsilon subunit of the Escherichia coli F1F0 ATP synthase. J Bacteriol. 1995 Feb;177(3):851-3. doi: 10.1128/jb.177.3.851-853.1995. PubMed PMID: 7836327; PubMed Central PMCID: PMC176671.

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Vik SB, Antonio BJ. A mechanism of proton translocation by F1F0 ATP synthases suggested by double mutants of the a subunit. J Biol Chem. 1994 Dec 2;269(48):30364-9. PubMed PMID: 7982950.

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Wang S, Vik SB. Single amino acid insertions probe the alpha subunit of the Escherichia coli F1F0-ATP synthase. J Biol Chem. 1994 Jan 28;269(4):3095-9. PubMed PMID: 8300644.

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Vik SB, Dao NN. Prediction of transmembrane topology of F0 proteins from Escherichia coli F1F0 ATP synthase using variational and hydrophobic moment analyses. Biochim Biophys Acta. 1992 Dec 7;1140(2):199-207. doi: 10.1016/0005-2728(92)90009-q. PubMed PMID: 1445940.

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LaRoe DJ, Vik SB. Mutations at Glu-32 and His-39 in the epsilon subunit of the Escherichia coli F1F0 ATP synthase affect its inhibitory properties. J Bacteriol. 1992 Jan;174(2):633-7. doi: 10.1128/jb.174.2.633-637.1992. PubMed PMID: 1345913; PubMed Central PMCID: PMC205761.

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Vik SB, Lee D, Marshall PA. Temperature-sensitive mutations at the carboxy terminus of the alpha subunit of the Escherichia coli F1F0 ATP synthase. J Bacteriol. 1991 Jul;173(14):4544-8. doi: 10.1128/jb.173.14.4544-4548.1991. PubMed PMID: 1829729; PubMed Central PMCID: PMC208122.

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Vik SB, Lee D, Curtis CE, Nguyen LT. Mutagenesis of the a subunit of the F1F0-ATP synthase from Escherichia coli in the region of Asn-192. Arch Biochem Biophys. 1990 Oct;282(1):125-31. doi: 10.1016/0003-9861(90)90095-g. PubMed PMID: 2145803.

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Vik SB, Cain BD, Chun KT, Simoni RD. Mutagenesis of the alpha subunit of the F1Fo-ATPase from Escherichia coli. Mutations at Glu-196, Pro-190, and Ser-199. J Biol Chem. 1988 May 15;263(14):6599-605. PubMed PMID: 2896196.

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Vik SB, Simoni RD. F1F0-ATPase from Escherichia coli with mutant F0 subunits. Partial purification and immunoprecipitation of F1F0 complexes. J Biol Chem. 1987 Jun 15;262(17):8340-6. PubMed PMID: 2885319.

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Vik SB, Hatefi Y. Inhibition of mitochondrial NADH:ubiquinone oxidoreductase by ethoxyformic anhydride. Biochem Int. 1984 Nov;9(5):547-55. PubMed PMID: 6441575.

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Yagi T, Matsuno-Yagi A, Vik SB, Hatefi Y. Modulation of the kinetics and the steady-state level of intermediates of mitochondrial coupled reactions by inhibitors and uncouplers. Biochemistry. 1984 Feb 28;23(5):1029-36. doi: 10.1021/bi00300a035. PubMed PMID: 6712922.