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Li ZR, McComick TH, Clark SJ. Using Bayesian Latent Gaussian Graphical Models to Infer Symptom Associations in Verbal Autopsies. Bayesian Anal. 2020 Sep;15(3):781-807. doi: 10.1214/19-ba1172. Epub 2019 Sep 24. PubMed PMID: 33273996; PubMed Central PMCID: PMC7709479.
Gómez-Olivé FX, Houle B, Rosenberg M, Kabudula C, Mojola S, Rohr JK, Clark S, Angotti N, Schatz E, Kahn K, Bärnighausen T, Menken J. Brief Report: HIV Incidence Among Older Adults in a Rural South African Setting: 2010-2015. J Acquir Immune Defic Syndr. 2020 Sep 1;85(1):18-22. doi: 10.1097/QAI.0000000000002404. PubMed PMID: 32516151; PubMed Central PMCID: PMC7417014.
Houle B, Yu ST, Angotti N, Schatz E, Kabudula CW, Gómez-Olivé FX, Clark SJ, Menken J, Mojola SA. Clusters of HIV Risk and Protective Sexual Behaviors in Agincourt, Rural South Africa: Findings from the Ha Nakekela Population-Based Study of Ages 15 and Older. Arch Sex Behav. 2020 Aug;49(6):2057-2068. doi: 10.1007/s10508-020-01663-5. Epub 2020 Mar 30. PubMed PMID: 32232623; PubMed Central PMCID: PMC7321875.
Calvert C, Marston M, Slaymaker E, Crampin AC, Price AJ, Klein N, Herbst K, Michael D, Urassa M, Clark SJ, Ronsmans C, Reniers G. Direct maternal deaths attributable to HIV in the era of antiretroviral therapy: evidence from three population-based HIV cohorts with verbal autopsy. AIDS. 2020 Jul 15;34(9):1397-1405. doi: 10.1097/QAD.0000000000002552. PubMed PMID: 32590436.
Setel P, AbouZahr C, Atuheire EB, Bratschi M, Cercone E, Chinganya O, Clapham B, Clark SJ, Congdon C, de Savigny D, Karpati A, Nichols E, Jakob R, Mwanza J, Muhwava W, Nahmias P, Ortiz EM, Tshangela A. Mortality surveillance during the COVID-19 pandemic. Bull World Health Organ. 2020 Jun 1;98(6):374. doi: 10.2471/BLT.20.263194. PubMed PMID: 32514207; PubMed Central PMCID: PMC7265935.
Kunihama T, Li ZR, Clark SJ, McCormick TH. BAYESIAN FACTOR MODELS FOR PROBABILISTIC CAUSE OF DEATH ASSESSMENT WITH VERBAL AUTOPSIES. Ann Appl Stat. 2020 Mar;14(1):241-256. doi: 10.1214/19-aoas1253. Epub 2020 Apr 16. PubMed PMID: 33520049; PubMed Central PMCID: PMC7845920.
Li ZR, McCormick TH, Clark SJ. Non-confirming replication of "Performance of InSilicoVA for assigning causes of death to verbal autopsies: multisite validation study using clinical diagnostic gold standards," by Flaxman et al. BMC Med. 2020 Mar 26;18(1):69. doi: 10.1186/s12916-020-01518-9. PubMed PMID: 32213178; PubMed Central PMCID: PMC7098138.
Wakefield J, Fuglstad GA, Riebler A, Godwin J, Wilson K, Clark SJ. Estimating under-five mortality in space and time in a developing world context. Stat Methods Med Res. 2019 Sep;28(9):2614-2634. doi: 10.1177/0962280218767988. Epub 2018 Apr 19. PubMed PMID: 29671377; PubMed Central PMCID: PMC6599729.
Jha P, Kumar D, Dikshit R, Budukh A, Begum R, Sati P, Kolpak P, Wen R, Raithatha SJ, Shah U, Li ZR, Aleksandrowicz L, Shah P, Piyasena K, McCormick TH, Gelband H, Clark SJ. Automated versus physician assignment of cause of death for verbal autopsies: randomized trial of 9374 deaths in 117 villages in India. BMC Med. 2019 Jun 27;17(1):116. doi: 10.1186/s12916-019-1353-2. PubMed PMID: 31242925; PubMed Central PMCID: PMC6595581.
Li ZR, McCormick TH. An Expectation Conditional Maximization approach for Gaussian graphical models. J Comput Graph Stat. 2019;28(4):767-777. doi: 10.1080/10618600.2019.1609976. Epub 2019 Jun 19. PubMed PMID: 33033426; PubMed Central PMCID: PMC7540244.
Clark SJ. A General Age-Specific Mortality Model With an Example Indexed by Child Mortality or Both Child and Adult Mortality. Demography. 2019 Jun;56(3):1131-1159. doi: 10.1007/s13524-019-00785-3. PubMed PMID: 31140151; PubMed Central PMCID: PMC6594863.
Byass P, Hussain-Alkhateeb L, D'Ambruoso L, Clark S, Davies J, Fottrell E, Bird J, Kabudula C, Tollman S, Kahn K, Schiöler L, Petzold M. An integrated approach to processing WHO-2016 verbal autopsy data: the InterVA-5 model. BMC Med. 2019 May 30;17(1):102. doi: 10.1186/s12916-019-1333-6. PubMed PMID: 31146736; PubMed Central PMCID: PMC6543589.
Li Z, Hsiao Y, Godwin J, Martin BD, Wakefield J, Clark SJ. Changes in the spatial distribution of the under-five mortality rate: Small-area analysis of 122 DHS surveys in 262 subregions of 35 countries in Africa. PLoS One. 2019;14(1):e0210645. doi: 10.1371/journal.pone.0210645. eCollection 2019. PubMed PMID: 30668609; PubMed Central PMCID: PMC6342310.
Li Z, McCormick T, Clark S. Bayesian Joint Spike-and-Slab Graphical Lasso. Proceedings of the 36th International Conference on Machine Learning. 2019; 97:3877--3885. NIHMSID: NIHMS1068351.
Houle B, Mojola SA, Angotti N, Schatz E, Gómez-Olivé FX, Clark SJ, Williams JR, Kabudula C, Tollman S, Menken J. Sexual behavior and HIV risk across the life course in rural South Africa: trends and comparisons. AIDS Care. 2018 Nov;30(11):1435-1443. doi: 10.1080/09540121.2018.1468008. Epub 2018 Apr 27. PubMed PMID: 29701073; PubMed Central PMCID: PMC6150786.
Sharrow DJ, Godwin J, He Y, Clark SJ, Raftery AE. Probabilistic population projections for countries with generalized HIV/AIDS epidemics. Popul Stud (Camb). 2018 Mar;72(1):1-15. doi: 10.1080/00324728.2017.1401654. Epub 2017 Dec 19. PubMed PMID: 29256327; PubMed Central PMCID: PMC5921864.
Clark SJ, Wakefield J, McCormick T, Ross M. Hyak mortality monitoring system: innovative sampling and estimation methods - proof of concept by simulation. Glob Health Epidemiol Genom. 2018;3:e3. doi: 10.1017/gheg.2017.15. eCollection 2018. PubMed PMID: 29868228; PubMed Central PMCID: PMC5870438.
Pantazis A, Clark SJ. A parsimonious characterization of change in global age-specific and total fertility rates. PLoS One. 2018;13(1):e0190574. doi: 10.1371/journal.pone.0190574. eCollection 2018. PubMed PMID: 29377899; PubMed Central PMCID: PMC5788345.
Nichols EK, Byass P, Chandramohan D, Clark SJ, Flaxman AD, Jakob R, Leitao J, Maire N, Rao C, Riley I, Setel PW. The WHO 2016 verbal autopsy instrument: An international standard suitable for automated analysis by InterVA, InSilicoVA, and Tariff 2.0. PLoS Med. 2018 Jan;15(1):e1002486. doi: 10.1371/journal.pmed.1002486. eCollection 2018 Jan. PubMed PMID: 29320495; PubMed Central PMCID: PMC5761828.
Houle B, Angotti N, Gómez-Olivé FX, Clark SJ. Fieldworker effects on substance use reporting in a rural South African setting. Int J Alcohol Drug Res. 2018;7(1):29-39. doi: 10.7895/ijadr.246. PubMed PMID: 31191791; PubMed Central PMCID: PMC6561499.
Reniers G, Blom S, Lieber J, Herbst AJ, Calvert C, Bor J, Barnighausen T, Zaba B, Li ZR, Clark SJ, Grant AD, Lessells R, Eaton JW, Hosegood V. Tuberculosis mortality and the male survival deficit in rural South Africa: An observational community cohort study. PLoS One. 2017;12(10):e0185692. doi: 10.1371/journal.pone.0185692. eCollection 2017. PubMed PMID: 29016619; PubMed Central PMCID: PMC5634548.
Kabudula CW, Houle B, Collinson MA, Kahn K, Gómez-Olivé FX, Tollman S, Clark SJ. Socioeconomic differences in mortality in the antiretroviral therapy era in Agincourt, rural South Africa, 2001-13: a population surveillance analysis. Lancet Glob Health. 2017 Sep;5(9):e924-e935. doi: 10.1016/S2214-109X(17)30297-8. PubMed PMID: 28807190; PubMed Central PMCID: PMC5559644.
Kabudula CW, Houle B, Collinson MA, Kahn K, Gómez-Olivé FX, Clark SJ, Tollman S. Progression of the epidemiological transition in a rural South African setting: findings from population surveillance in Agincourt, 1993-2013. BMC Public Health. 2017 May 10;17(1):424. doi: 10.1186/s12889-017-4312-x. PubMed PMID: 28486934; PubMed Central PMCID: PMC5424387.
Reniers G, Blom S, Calvert C, Martin-Onraet A, Herbst AJ, Eaton JW, Bor J, Slaymaker E, Li ZR, Clark SJ, Bärnighausen T, Zaba B, Hosegood V. Trends in the burden of HIV mortality after roll-out of antiretroviral therapy in KwaZulu-Natal, South Africa: an observational community cohort study. Lancet HIV. 2017 Mar;4(3):e113-e121. doi: 10.1016/S2352-3018(16)30225-9. Epub 2016 Dec 10. PubMed PMID: 27956187; PubMed Central PMCID: PMC5405557.
Kabudula CW, Houle B, Collinson MA, Kahn K, Tollman S, Clark S. Assessing Changes in Household Socioeconomic Status in Rural South Africa, 2001-2013: A Distributional Analysis Using Household Asset Indicators. Soc Indic Res. 2017;133(3):1047-1073. doi: 10.1007/s11205-016-1397-z. Epub 2016 Jun 28. PubMed PMID: 28931968; PubMed Central PMCID: PMC5579134.
McCormick TH, Li ZR, Calvert C, Crampin AC, Kahn K, Clark SJ. Probabilistic Cause-of-death Assignment using Verbal Autopsies. J Am Stat Assoc. 2016;111(515):1036-1049. doi: 10.1080/01621459.2016.1152191. Epub 2016 Oct 18. PubMed PMID: 27990036; PubMed Central PMCID: PMC5154628.
Bawah A, Houle B, Alam N, Razzaque A, Streatfield PK, Debpuur C, Welaga P, Oduro A, Hodgson A, Tollman S, Collinson M, Kahn K, Toan TK, Phuc HD, Chuc NT, Sankoh O, Clark SJ. The Evolving Demographic and Health Transition in Four Low- and Middle-Income Countries: Evidence from Four Sites in the INDEPTH Network of Longitudinal Health and Demographic Surveillance Systems. PLoS One. 2016;11(6):e0157281. doi: 10.1371/journal.pone.0157281. eCollection 2016. PubMed PMID: 27304429; PubMed Central PMCID: PMC4909223.
Houle B, Pantazis A, Kabudula C, Tollman S, Clark SJ. Social patterns and differentials in the fertility transition in the context of HIV/AIDS: evidence from population surveillance, rural South Africa, 1993 - 2013. Popul Health Metr. 2016;14:10. doi: 10.1186/s12963-016-0079-z. eCollection 2016. PubMed PMID: 27019642; PubMed Central PMCID: PMC4807549.
Reniers G, Wamukoya M, Urassa M, Nyaguara A, Nakiyingi-Miiro J, Lutalo T, Hosegood V, Gregson S, Gómez-Olivé X, Geubbels E, Crampin AC, Wringe A, Waswa L, Tollman S, Todd J, Slaymaker E, Serwadda D, Price A, Oti S, Nyirenda MJ, Nabukalu D, Nyamukapa C, Nalugoda F, Mugurungi O, Mtenga B, Mills L, Michael D, McLean E, McGrath N, Martin E, Marston M, Maquins S, Levira F, Kyobutungi C, Kwaro D, Kasamba I, Kanjala C, Kahn K, Kabudula C, Herbst K, Gareta D, Eaton JW, Clark SJ, Church K, Chihana M, Calvert C, Beguy D, Asiki G, Amri S, Abdul R, Zaba B. Data Resource Profile: Network for Analysing Longitudinal Population-based HIV/AIDS data on Africa (ALPHA Network). Int J Epidemiol. 2016 Feb;45(1):83-93. doi: 10.1093/ije/dyv343. Epub 2016 Mar 10. PubMed PMID: 26968480; PubMed Central PMCID: PMC5823235.
Wheldon MC, Raftery AE, Clark SJ, Gerland P. Bayesian population reconstruction of female populations for less developed and more developed countries. Popul Stud (Camb). 2016;70(1):21-37. doi: 10.1080/00324728.2016.1139164. Epub 2016 Feb 23. PubMed PMID: 26902913; PubMed Central PMCID: PMC4798897.
Houle B, Angotti N, Clark SJ, Williams J, Gómez-Olivé FX, Menken J, Kabudula C, Klipstein-Grobusch K, Tollman SM. Let's Talk about Sex, Maybe: Interviewers, Respondents, and Sexual Behavior Reporting in Rural South Africa. Field methods. 2016;28(2):112-132. doi: 10.1177/1525822X15595343. Epub 2015 Aug 13. PubMed PMID: 28190977; PubMed Central PMCID: PMC5300069.
Mercer LD, Wakefield J, Pantazis A, Lutambi AM, Masanja H, Clark S. Space-Time Smoothing of Complex Survey Data: Small Area Estimation for Child Mortality. Ann Appl Stat. 2015 Dec;9(4):1889-1905. doi: 10.1214/15-AOAS872. PubMed PMID: 27468328; PubMed Central PMCID: PMC4959836.
Helleringer S, Noymer A, Clark SJ, McCormick T. Did Ebola relatively spare children?. Lancet. 2015 Oct 10;386(10002):1442-3. doi: 10.1016/S0140-6736(15)00415-8. PubMed PMID: 26466040.
Wheldon MC, Raftery AE, Clark SJ, Gerland P. Bayesian Reconstruction of Two-Sex Populations by Age: Estimating Sex Ratios at Birth and Sex Ratios of Mortality. J R Stat Soc Ser A Stat Soc. 2015 Oct;178(4):977-1007. doi: 10.1111/rssa.12104. Epub 2015 Feb 12. PubMed PMID: 26612972; PubMed Central PMCID: PMC4657758.
Houle B, Clark SJ, Kahn K, Tollman S, Yamin A. The impacts of maternal mortality and cause of death on children's risk of dying in rural South Africa: evidence from a population based surveillance study (1992-2013). Reprod Health. 2015 May 6;12 Suppl 1:S7. doi: 10.1186/1742-4755-12-S1-S7. Epub 2015 May 6. PubMed PMID: 26000547; PubMed Central PMCID: PMC4423728.
Zaba B, Reniers G, Slaymaker E, Todd J, Glynn J, Crampin A, Urassa M, Lutalo T, Newell ML, Hosegood V, Clark S, Gregson S. Understanding why people participate in HIV surveillance. Bull World Health Organ. 2015 May 1;93(5):356-7. doi: 10.2471/BLT.14.135756. PubMed PMID: 26229208; PubMed Central PMCID: PMC4431510.
Clark SJ, Gómez-Olivé FX, Houle B, Thorogood M, Klipstein-Grobusch K, Angotti N, Kabudula C, Williams J, Menken J, Tollman S. Cardiometabolic disease risk and HIV status in rural South Africa: establishing a baseline. BMC Public Health. 2015 Feb 12;15:135. doi: 10.1186/s12889-015-1467-1. PubMed PMID: 25885455; PubMed Central PMCID: PMC4335669.
Clark SJ, Houle B. Validation, replication, and sensitivity testing of Heckman-type selection models to adjust estimates of HIV prevalence. PLoS One. 2014;9(11):e112563. doi: 10.1371/journal.pone.0112563. eCollection 2014. PubMed PMID: 25402333; PubMed Central PMCID: PMC4234405.
Houle B, Clark SJ, Gómez-Olivé FX, Kahn K, Tollman SM. The unfolding counter-transition in rural South Africa: mortality and cause of death, 1994-2009. PLoS One. 2014;9(6):e100420. doi: 10.1371/journal.pone.0100420. eCollection 2014. PubMed PMID: 24959714; PubMed Central PMCID: PMC4068997.
McParland D, Gormley IC, McCormick TH, Clark SJ, Kabudula CW, Collinson MA. CLUSTERING SOUTH AFRICAN HOUSEHOLDS BASED ON THEIR ASSET STATUS USING LATENT VARIABLE MODELS. Ann Appl Stat. 2014 Jun 1;8(2):747-776. doi: 10.1214/14-AOAS726. PubMed PMID: 25485026; PubMed Central PMCID: PMC4256055.
Sharrow DJ, Clark SJ, Raftery AE. Modeling age-specific mortality for countries with generalized HIV epidemics. PLoS One. 2014;9(5):e96447. doi: 10.1371/journal.pone.0096447. eCollection 2014. PubMed PMID: 24853081; PubMed Central PMCID: PMC4031074.
Collinson MA, White MJ, Bocquier P, McGarvey ST, Afolabi SA, Clark SJ, Kahn K, Tollman SM. Migration and the epidemiological transition: insights from the Agincourt sub-district of northeast South Africa. Glob Health Action. 2014;7:23514. doi: 10.3402/gha.v7.23514. eCollection 2014. PubMed PMID: 24848656; PubMed Central PMCID: PMC4028907.
Bocquier P, Collinson MA, Clark SJ, Gerritsen AA, Kahn K, TollMan SM. Ubiquitous burden: the contribution of migration to AIDS and Tuberculosis mortality in rural South Africa. Etude Popul Afr. 2014 May;28(1):691-701. doi: 10.11564/28-0-525. PubMed PMID: 25574071; PubMed Central PMCID: PMC4285358.
Sankoh O, Sharrow D, Herbst K, Whiteson Kabudula C, Alam N, Kant S, Ravn H, Bhuiya A, Thi Vui L, Darikwa T, Gyapong M, Jasseh M, Chuc Thi Kim N, Abdullah S, Crampin A, Ojal J, Owusu-Agyei S, Odhiambo F, Urassa M, Streatfield K, Shimada M, Sacoor C, Beguy D, Derra K, Wak G, Delaunay V, Sie A, Soura A, Diallo D, Wilopo S, Masanja H, Bonfoh B, Phuanukoonnon S, Clark SJ. The INDEPTH standard population for low- and middle-income countries, 2013. Glob Health Action. 2014;7:23286. doi: 10.3402/gha.v7.23286. eCollection 2014. PubMed PMID: 24679543; PubMed Central PMCID: PMC3969509.
Pantazis A, Clark SJ. Male and female sterility in Zambia. Demogr Res. 2014 Jan-Jun;30:413-428. doi: 10.4054/DemRes.2014.30.14. Epub 2014 Feb 7. PubMed PMID: 31191114; PubMed Central PMCID: PMC6561476.
Sharrow DJ, Clark SJ, Collinson MA, Kahn K, Tollman SM. The Age Pattern of Increases in Mortality Affected by HIV: Bayesian Fit of the Heligman-Pollard Model to Data from the Agincourt HDSS Field Site in Rural Northeast South Africa. Demogr Res. 2013 Dec 3;29:1039-1096. doi: 10.4054/DemRes.2013.29.39. PubMed PMID: 24453696; PubMed Central PMCID: PMC3896243.
Houle B, Stein A, Kahn K, Madhavan S, Collinson M, Tollman SM, Clark SJ. Household context and child mortality in rural South Africa: the effects of birth spacing, shared mortality, household composition and socio-economic status. Int J Epidemiol. 2013 Oct;42(5):1444-54. doi: 10.1093/ije/dyt149. Epub 2013 Aug 2. PubMed PMID: 23912808; PubMed Central PMCID: PMC3807614.
Clark SJ, Kahn K, Houle B, Arteche A, Collinson MA, Tollman SM, Stein A. Young children's probability of dying before and after their mother's death: a rural South African population-based surveillance study. PLoS Med. 2013;10(3):e1001409. doi: 10.1371/journal.pmed.1001409. Epub 2013 Mar 26. PubMed PMID: 23555200; PubMed Central PMCID: PMC3608552.
Wheldon MC, Raftery AE, Clark SJ, Gerland P. Reconstructing Past Populations With Uncertainty From Fragmentary Data. J Am Stat Assoc. 2013 Mar;108(501):96-110. doi: 10.1080/01621459.2012.737729. Epub 2013 Mar 15. PubMed PMID: 23579202; PubMed Central PMCID: PMC3613971.
Gómez-Olivé FX, Angotti N, Houle B, Klipstein-Grobusch K, Kabudula C, Menken J, Williams J, Tollman S, Clark SJ. Prevalence of HIV among those 15 and older in rural South Africa. AIDS Care. 2013;25(9):1122-8. doi: 10.1080/09540121.2012.750710. Epub 2013 Jan 11. PubMed PMID: 23311396; PubMed Central PMCID: PMC3778517.
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