My Bibliography

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Nelson CK, Kline M, Payne A, Dillon CR. Computational predictions of magnetic resonance acoustic radiation force imaging for breast cancer focused ultrasound therapy. Int J Hyperthermia. 2025 Dec;42(1):2452927. doi: 10.1080/02656736.2025.2452927. Epub 2025 Jan 22. PubMed PMID: 39842813; PubMed Central PMCID: PMC11902895.

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Kwan E, Hunt B, Paccione EN, Orkild BA, Bergquist JA, Ishidoya Y, Yazaki K, Mendes JK, DiBella EVR, MacLeod RS, Dosdall DJ, Ranjan R. Functional and Structural Remodeling as Atrial Fibrillation Progresses in a Persistent Atrial Fibrillation Canine Model. JACC Clin Electrophysiol. 2025 Apr;11(4):720-734. doi: 10.1016/j.jacep.2024.10.001. Epub 2024 Nov 27. PubMed PMID: 39614863; PubMed Central PMCID: PMC12043413.

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Johnson LG, Mozingo JD, Atkins PR, Schwab S, Morris A, Elhabian SY, Wilson DR, Kim HKW, Anderson AE. A framework for three-dimensional statistical shape modeling of the proximal femur in Legg-Calvé-Perthes disease. Int J Comput Assist Radiol Surg. 2025 Mar;20(3):569-578. doi: 10.1007/s11548-024-03272-2. Epub 2024 Oct 8. PubMed PMID: 39377856; PubMed Central PMCID: PMC11930624.

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Jiang D, Robinson AJ, Nkansah A, Leung J, Guo L, Maas SA, Weiss JA, Cosgriff-Hernandez EM, Timmins LH. A computational framework to optimize the mechanical behavior of synthetic vascular grafts. J Mech Behav Biomed Mater. 2025 Mar;163:106847. doi: 10.1016/j.jmbbm.2024.106847. Epub 2024 Dec 4. PubMed PMID: 39708758; PubMed Central PMCID: PMC11812276.

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Bloom ET, Sabanayagam CR, Benson JM, Lin LM, Ross JL, Caplan JL, Elliott DM. Neural network auto-segmentation of serial-block-face scanning electron microscopy images exhibit collagen fibril structural differences with tendon type and health. J Orthop Res. 2025 Jan;43(1):5-13. doi: 10.1002/jor.25961. Epub 2024 Aug 23. PubMed PMID: 39180281; PubMed Central PMCID: PMC11756596.

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Ross BC, Kent RN 3rd, Saunders MN, Schwartz SR, Smiley BM, Hocevar SE, Chen SC, Xiao C, Williams LA, Anderson AJ, Cummings BJ, Baker BM, Shea LD. Building-Block Size Mediates Microporous Annealed Particle Hydrogel Tube Microenvironment Following Spinal Cord Injury. Adv Healthc Mater. 2024 Oct;13(25):e2302498. doi: 10.1002/adhm.202302498. Epub 2023 Oct 5. PubMed PMID: 37768019; PubMed Central PMCID: PMC10972780.

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Berggren CC, Jiang D, Jack Wang YF, Bergquist JA, Rupp LC, Liu Z, MacLeod RS, Narayan A, Timmins LH. Influence of material parameter variability on the predicted coronary artery biomechanical environment via uncertainty quantification. Biomech Model Mechanobiol. 2024 Jun;23(3):927-940. doi: 10.1007/s10237-023-01814-2. Epub 2024 Feb 15. PubMed PMID: 38361087; PubMed Central PMCID: PMC11102342.

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Charlebois CM, Anderson DN, Smith EH, Davis TS, Newman BJ, Peters AY, Arain AM, Dorval AD, Rolston JD, Butson CR. Circadian changes in aperiodic activity are correlated with seizure reduction in patients with mesial temporal lobe epilepsy treated with responsive neurostimulation. Epilepsia. 2024 May;65(5):1360-1373. doi: 10.1111/epi.17938. Epub 2024 Mar 22. PubMed PMID: 38517356; PubMed Central PMCID: PMC11138949.

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Kwan E, Hunt B, Paccione E, Orkild B, Bergquist J, Yazaki K, Polejaeva I, Hsu E, Dosdall D, MacLeod R, Ranjan R. Structural Differences in Transgenic Animals Associated with Atrial Fibrillation. Computing in cardiology. 2024. NIHMSID: NIHMS2061960.

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Dade D, Bergquist J, MacLeod R, Ye X, Ranjan R, Steinberg B, Tasdizen T. A Survey of Augmentation Techniques for Enhancing ECG Representation through Self-Supervised Contrastive Learning. Computing in cardiology. 2024. NIHMSID: NIHMS2061969.

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Bergquist J, Dade D, Zenger B, MacLeod R, Ye X, Ranjan R, Tasdizen T, Steinberg B. Machine Learning Prediction of Blood Potassium at Different Time Cutoffs. Computing in cardiology. 2024. NIHMSID: NIHMS2061998.

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Busatto A, Tanner L, Gillette K, Narayan A, Plank G, MacLeod R. Application of Order and Sample Selection in Uncertainty Quantification of Cardiac Models. Computing in cardiology. 2024. NIHMSID: NIHMS2062003.

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Bergquist J, Orkild B, Paccione E, Kwan E, Zenger B, Hunt B, Yazaki K, MacLeod R, Narayan A, Ranjan R. Uncertainty Quantification of Fibrotic Conductivity Effects on Computational Model-Derived Ablation of Atypical Left Atrial Flutter. Computing in cardiology. 2024. NIHMSID: NIHMS2062005.

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Jin R, Bergquist J, Dade D, Zenger B, Ye X, Ranjan R, MacLeod R, Steinberg B, Tasdizen T. Machine Learning Estimation of Myocardial Ischemia Severity Using Body Surface ECG. Computing in cardiology. 2024. NIHMSID: NIHMS2062025.

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Bergquist JA, Zenger B, Brundage J, MacLeod RS, Shah R, Ye X, Lyones A, Ranjan R, Tasdizen T, Bunch TJ, Steinberg BA. Comparison of Machine Learning Detection of Low Left Ventricular Ejection Fraction Using Individual ECG Leads. Comput Cardiol (2010). 2023 Oct;50. doi: 10.22489/cinc.2023.047. Epub 2023 Dec 26. PubMed PMID: 39193485; PubMed Central PMCID: PMC11349306.

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Bergquist JA, Lange M, Zenger B, Orkild B, Paccione E, Kwan E, Hunt B, Dong J, MacLeod RS, Narayan A, Ranjan R. Uncertainty Quantification of the Effect of Variable Conductivity in Ventricular Fibrotic Regions on Ventricular Tachycardia. Comput Cardiol (2010). 2023 Oct;50. doi: 10.22489/cinc.2023.141. Epub 2023 Dec 26. PubMed PMID: 39193484; PubMed Central PMCID: PMC11349308.

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Rupp LC, Busatto A, Bergquist JA, Gillette K, Narayan A, Plank G, MacLeod RS. Uncertainty Quantification of Fiber Orientation and Epicardial Activation. Comput Cardiol (2010). 2023 Oct;50. doi: 10.22489/cinc.2023.137. Epub 2023 Dec 26. PubMed PMID: 39193483; PubMed Central PMCID: PMC11349307.

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Busatto A, Rupp LC, Gillette K, Narayan A, Plank G, MacLeod RS. Capturing the Influence of Conduction Velocity on Epicardial Activation Patterns Using Uncertainty Quantification. Comput Cardiol (2010). 2023 Oct;50. doi: 10.22489/cinc.2023.345. Epub 2023 Dec 26. PubMed PMID: 39193482; PubMed Central PMCID: PMC11349309.

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Paccione EN, Lange M, Orkild BA, Bergquist JA, Kwan E, Hunt B, Dosdall D, Macleod RS, Ranjan R. Effects of Biventricular Pacing Locations on Anti-Tachycardia Pacing Success in a Patient-Specific Model. Comput Cardiol (2010). 2023 Oct;2023. doi: 10.22489/CinC.2023.369. Epub 2023 Dec 26. PubMed PMID: 38435379; PubMed Central PMCID: PMC10906957.

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Bergquist JA, Zenger B, Rupp LC, Busatto A, Tate J, Brooks DH, Narayan A, MacLeod RS. Uncertainty quantification of the effect of cardiac position variability in the inverse problem of electrocardiographic imaging. Physiol Meas. 2023 Oct 13;44(10). doi: 10.1088/1361-6579/acfc32. PubMed PMID: 37734339.

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Roda GF, Stoneback JW, Gimarc D, Gaffney BMM. Above knee socket prosthesis use changes proximal femur morphology. Bone. 2023 Jul;172:116752. doi: 10.1016/j.bone.2023.116752. Epub 2023 Mar 31. PubMed PMID: 37004980; PubMed Central PMCID: PMC10198956.

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Uemura K, Hiraiwa T, Okamoto M, Tokunaga K, Anderson AE. The anterior center edge angle has limited ability to predict three-dimensional coverage of the femoral head in patients with developmental dysplasia of the hip undergoing curved periacetabular osteotomy. Arch Orthop Trauma Surg. 2023 Mar;143(3):1323-1330. doi: 10.1007/s00402-021-04258-4. Epub 2022 Jan 3. PubMed PMID: 34977962; PubMed Central PMCID: PMC9250550.

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Jiang X, Toloubidokhti M, Bergquist J, Zenger B, Good WW, MacLeod RS, Wang L. Improving Generalization by Learning Geometry-Dependent and Physics-Based Reconstruction of Image Sequences. IEEE Trans Med Imaging. 2023 Feb;42(2):403-415. doi: 10.1109/TMI.2022.3218170. Epub 2023 Feb 2. PubMed PMID: 36306312; PubMed Central PMCID: PMC10079565.

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Kamali R, Gillete K, Tate J, Abhyankar DA, Dosdall DJ, Plank G, Bunch TJ, Macleod RS, Ranjan R. Treatment Planning for Atrial Fibrillation Using Patient-Specific Models Showing the Importance of Fibrillatory-Areas. Ann Biomed Eng. 2023 Feb;51(2):329-342. doi: 10.1007/s10439-022-03029-5. Epub 2022 Aug 5. PubMed PMID: 35930093; PubMed Central PMCID: PMC10440744.

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Iyer K, Morris A, Zenger B, Karanth K, Orkild BA, Korshak O, Elhabian S. Statistical Shape Modeling of Biventricular Anatomy with Shared Boundaries. Stat Atlases Comput Models Heart. 2022 Sep;13593:302-316. doi: 10.1007/978-3-031-23443-9_28. Epub 2023 Jan 28. PubMed PMID: 37067883; PubMed Central PMCID: PMC10103081.

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Narayan A, Liu Z, Bergquist JA, Charlebois C, Rampersad S, Rupp L, Brooks D, White D, Tate J, MacLeod RS. UncertainSCI: Uncertainty quantification for computational models in biomedicine and bioengineering. Comput Biol Med. 2023 Jan;152:106407. doi: 10.1016/j.compbiomed.2022.106407. Epub 2022 Dec 5. PubMed PMID: 36521358; PubMed Central PMCID: PMC9812870.

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Njeru DK, Athawale TM, France JJ, Johnson CR. Quantifying and Visualizing Uncertainty for Source Localization in Electrocardiographic Imaging. Comput Methods Biomech Biomed Eng Imaging Vis. 2023;11(3):812-822. doi: 10.1080/21681163.2022.2113824. Epub 2022 Sep 12. PubMed PMID: 37284179; PubMed Central PMCID: PMC10241371.

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Orkild B, Bergquist J, Paccione E, Lange M, Kwan E, Hunt B, MacLeod R, Narayan A, Ranjan R. A Grid Search of Fibrosis Thresholds for Uncertainty Quantification in Atrial Flutter Simulations. Computing in cardiology. 2023. NIHMSID: NIHMS2061954.

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Atkins PR, Agrawal P, Mozingo JD, Uemura K, Tokunaga K, Peters CL, Elhabian SY, Whitaker RT, Anderson AE. Prediction of femoral head coverage from articulated statistical shape models of patients with developmental dysplasia of the hip. J Orthop Res. 2022 Sep;40(9):2113-2126. doi: 10.1002/jor.25227. Epub 2021 Dec 5. PubMed PMID: 34812545; PubMed Central PMCID: PMC9124729.

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Charlebois CM, Anderson DN, Johnson KA, Philip BJ, Davis TS, Newman BJ, Peters AY, Arain AM, Dorval AD, Rolston JD, Butson CR. Patient-specific structural connectivity informs outcomes of responsive neurostimulation for temporal lobe epilepsy. Epilepsia. 2022 Aug;63(8):2037-2055. doi: 10.1111/epi.17298. Epub 2022 Jun 4. PubMed PMID: 35560062; PubMed Central PMCID: PMC11265293.

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Ishidoya Y, Kwan E, Dosdall DJ, Macleod RS, Navaravong L, Steinberg BA, Jared Bunch T, Ranjan R. Shorter distance between the esophagus and the left atrium is associated with higher rates of esophageal thermal injury after radiofrequency ablation. J Cardiovasc Electrophysiol. 2022 Jul;33(7):1460-1471. doi: 10.1111/jce.15554. Epub 2022 Jun 3. PubMed PMID: 35644036; PubMed Central PMCID: PMC9276629.

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Athawale TM, Maljovec D, Yan L, Johnson CR, Pascucci V, Wang B. Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps. IEEE Trans Vis Comput Graph. 2022 Apr;28(4):1955-1966. doi: 10.1109/TVCG.2020.3022359. Epub 2022 Feb 25. PubMed PMID: 32897861; PubMed Central PMCID: PMC8935531.

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Bergquist JA, Coll-Font J, Zenger B, Rupp LC, Good WW, Brooks DH, MacLeod RS. Reconstruction of cardiac position using body surface potentials. Comput Biol Med. 2022 Mar;142:105174. doi: 10.1016/j.compbiomed.2021.105174. Epub 2022 Jan 20. PubMed PMID: 35065409; PubMed Central PMCID: PMC8844250.

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Goparaju A, Iyer K, Bône A, Hu N, Henninger HB, Anderson AE, Durrleman S, Jacxsens M, Morris A, Csecs I, Marrouche N, Elhabian SY. Benchmarking off-the-shelf statistical shape modeling tools in clinical applications. Med Image Anal. 2022 Feb;76:102271. doi: 10.1016/j.media.2021.102271. Epub 2021 Oct 26. PubMed PMID: 34974213; PubMed Central PMCID: PMC8792348.

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Bergquist J, Rupp L, Zenger B, Brundage J, Busatto A, MacLeod RS. Body Surface Potential Mapping: Contemporary Applications and Future Perspectives. Hearts (Basel). 2021 Dec;2(4):514-542. doi: 10.3390/hearts2040040. Epub 2021 Nov 5. PubMed PMID: 35665072; PubMed Central PMCID: PMC9164986.

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Zenger B, Good WW, Bergquist JA, Rupp LC, Perez M, Stoddard GJ, Sharma V, MacLeod RS. Transient recovery of epicardial and torso ST-segment ischemic signals during cardiac stress tests: A possible physiological mechanism. J Electrocardiol. 2021 Nov-Dec;69S:38-44. doi: 10.1016/j.jelectrocard.2021.07.007. Epub 2021 Jul 21. PubMed PMID: 34384615; PubMed Central PMCID: PMC8664997.

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Good WW, Gillette KK, Zenger B, Bergquist JA, Rupp LC, Tate J, Anderson D, Gsell MAF, Plank G, MacLeod RS. Estimation and Validation of Cardiac Conduction Velocity and Wavefront Reconstruction Using Epicardial and Volumetric Data. IEEE Trans Biomed Eng. 2021 Nov;68(11):3290-3300. doi: 10.1109/TBME.2021.3069792. Epub 2021 Oct 19. PubMed PMID: 33784613; PubMed Central PMCID: PMC9014369.

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Good WW, Zenger B, Bergquist JA, Rupp LC, Gillette K, Angel N, Chou D, Plank G, MacLeod RS. Combining endocardial mapping and electrocardiographic imaging (ECGI) for improving PVC localization: A feasibility study. J Electrocardiol. 2021 Nov-Dec;69S:51-54. doi: 10.1016/j.jelectrocard.2021.08.013. Epub 2021 Sep 30. PubMed PMID: 34649726; PubMed Central PMCID: PMC9014370.

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Sabel BA, Kresinsky A, Cardenas-Morales L, Haueisen J, Hunold A, Dannhauer M, Antal A. Evaluating Current Density Modeling of Non-Invasive Eye and Brain Electrical Stimulation Using Phosphene Thresholds. IEEE Trans Neural Syst Rehabil Eng. 2021;29:2133-2141. doi: 10.1109/TNSRE.2021.3120148. Epub 2021 Oct 28. PubMed PMID: 34648453; PubMed Central PMCID: PMC8594910.

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Johnson KA, Duffley G, Foltynie T, Hariz M, Zrinzo L, Joyce EM, Akram H, Servello D, Galbiati TF, Bona A, Porta M, Meng FG, Leentjens AFG, Gunduz A, Hu W, Foote KD, Okun MS, Butson CR. Basal Ganglia Pathways Associated With Therapeutic Pallidal Deep Brain Stimulation for Tourette Syndrome. Biol Psychiatry Cogn Neurosci Neuroimaging. 2021 Oct;6(10):961-972. doi: 10.1016/j.bpsc.2020.11.005. Epub 2020 Nov 24. PubMed PMID: 33536144; PubMed Central PMCID: PMC8864935.

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Bhalodia R, Elhabian S, Kavan L, Whitaker R. Leveraging unsupervised image registration for discovery of landmark shape descriptor. Med Image Anal. 2021 Oct;73:102157. doi: 10.1016/j.media.2021.102157. Epub 2021 Jul 9. PubMed PMID: 34293535; PubMed Central PMCID: PMC8489970.

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Zenger B, Good WW, Bergquist JA, Rupp LC, Perez M, Stoddard GJ, Sharma V, MacLeod RS. Pharmacological and simulated exercise cardiac stress tests produce different ischemic signatures in high-resolution experimental mapping studies. J Electrocardiol. 2021 Sep-Oct;68:56-64. doi: 10.1016/j.jelectrocard.2021.07.009. Epub 2021 Jul 24. PubMed PMID: 34339897; PubMed Central PMCID: PMC8490320.

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Rababah AS, Bear LR, Dogrusoz YS, Good W, Bergquist J, Stoks J, MacLeod R, Rjoob K, Jennings M, Mclaughlin J, Finlay DD. The effect of interpolating low amplitude leads on the inverse reconstruction of cardiac electrical activity. Comput Biol Med. 2021 Sep;136:104666. doi: 10.1016/j.compbiomed.2021.104666. Epub 2021 Jul 21. PubMed PMID: 34315032; PubMed Central PMCID: PMC8461453.

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Rupp LC, Bergquist JA, Zenger B, Gillette K, Narayan A, Tate JD, Plank G, MacLeod RS. The Role of Myocardial Fiber Direction in Epicardial Activation Patterns via Uncertainty Quantification. Comput Cardiol (2010). 2021 Sep;48. doi: 10.23919/cinc53138.2021.9662950. PubMed PMID: 35449765; PubMed Central PMCID: PMC9020927.

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Bergquist JA, Zenger B, Rupp LC, Narayan A, Tate J, MacLeod RS. Uncertainty Quantification in Simulations of Myocardial Ischemia. Comput Cardiol (2010). 2021 Sep;48. doi: 10.23919/cinc53138.2021.9662837. PubMed PMID: 35449764; PubMed Central PMCID: PMC9019765.

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Brundage JN, Suliafu V, Bergquist JA, Zenger B, Rupp LC, Wang B, MacLeod R. Myocardial Ischemia Detection Using Body Surface Potential Mappings and Machine Learning. Comput Cardiol (2010). 2021 Sep;48. doi: 10.23919/cinc53138.2021.9662808. PubMed PMID: 35464104; PubMed Central PMCID: PMC9026610.

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Tate JD, Elhabian S, Zemzemi N, Good WW, van Dam P, Brooks DH, MacLeod RS. A Cardiac Shape Model for Segmentation Uncertainty Quantification. Comput Cardiol (2010). 2021 Sep;48. doi: 10.23919/cinc53138.2021.9662917. PubMed PMID: 35479610; PubMed Central PMCID: PMC9039803.

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Bieging ET, Morris A, Chang L, Dagher L, Marrouche NF, Cates J. Statistical shape analysis of the left atrial appendage predicts stroke in atrial fibrillation. Int J Cardiovasc Imaging. 2021 Aug;37(8):2521-2527. doi: 10.1007/s10554-021-02262-8. Epub 2021 May 6. PubMed PMID: 33956285; PubMed Central PMCID: PMC8316337.

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Wan Y, Holman HA, Hansen C. Interactive Analysis for Large Volume Data from Fluorescence Microscopy at Cellular Precision. Comput Graph. 2021 Aug;98:138-149. doi: 10.1016/j.cag.2021.05.006. Epub 2021 May 24. PubMed PMID: 34602661; PubMed Central PMCID: PMC8486154.

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Bergquist JA, Good WW, Zenger B, Tate JD, Rupp LC, MacLeod RS. The electrocardiographic forward problem: A benchmark study. Comput Biol Med. 2021 Jul;134:104476. doi: 10.1016/j.compbiomed.2021.104476. Epub 2021 May 15. PubMed PMID: 34051453; PubMed Central PMCID: PMC8263490.